Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-269 |
| Cow position: | chr10:42747810-42748085 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 4-276 |
| Cow position: | chr10:24978427-24978137 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 90 |
| Conread position: | 252-448 |
| Cow position: | chr10:1378905-1379100 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 279-433 |
| Cow position: | chr10:8291482-8291636 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 137 |
| Conread position: | 279-433 |
| Cow position: | chr10:21488393-21488546 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 113 |
| Conread position: | 279-433 |
| Cow position: | chr10:39439587-39439742 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr10:57988559-57988392 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 283-405 |
| Cow position: | chr10:22583574-22583454 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 283-449 |
| Cow position: | chr10:22102677-22102838 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 284-458 |
| Cow position: | chr10:51781972-51781794 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 156 |
| Conread position: | 334-619 |
| Cow position: | chr10:16645565-16645272 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 353-620 |
| Cow position: | chr10:59664319-59664059 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 58, 135 |
| Conread position: | 385-616 |
| Cow position: | chr10:51696438-51696656 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 391-619 |
| Cow position: | chr10:34607247-34607476 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 181 |
| Conread position: | 393-620 |
| Cow position: | chr10:10048376-10048602 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 397-613 |
| Cow position: | chr10:26209566-26209347 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 397-616 |
| Cow position: | chr10:5543555-5543334 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 189 |
| Conread position: | 397-617 |
| Cow position: | chr10:9675761-9675543 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 397-618 |
| Cow position: | chr10:32503146-32503364 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 123 |
| Conread position: | 397-619 |
| Cow position: | chr10:14639655-14639446 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 397-619 |
| Cow position: | chr10:19678563-19678788 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 397-619 |
| Cow position: | chr10:37818864-37818640 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 397-620 |
| Cow position: | chr10:10468674-10468899 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 161, 101 |
| Conread position: | 397-620 |
| Cow position: | chr10:11487280-11487069 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 183, 8 |
| Conread position: | 397-620 |
| Cow position: | chr10:15462193-15462407 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 397-620 |
| Cow position: | chr10:21461936-21462156 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 397-620 |
| Cow position: | chr10:30224378-30224602 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 208 |
| Conread position: | 397-620 |
| Cow position: | chr10:30523361-30523147 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 171, 100 |
| Conread position: | 397-620 |
| Cow position: | chr10:35862533-35862307 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 397-620 |
| Cow position: | chr10:36001901-36002116 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 184, 61 |
| Conread position: | 397-620 |
| Cow position: | chr10:37528912-37528687 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 397-620 |
| Cow position: | chr10:39110300-39110086 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 397-620 |
| Cow position: | chr10:52278416-52278648 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 397-620 |
| Cow position: | chr10:61839296-61839513 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 397-620 |
| Cow position: | chr10:65424216-65423981 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 155 |
| Conread position: | 398-620 |
| Cow position: | chr10:20446796-20447012 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 398-620 |
| Cow position: | chr10:52046562-52046781 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 172, 50 |
| Conread position: | 403-619 |
| Cow position: | chr10:24971895-24971696 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 179, 45 |
| Conread position: | 410-619 |
| Cow position: | chr10:31027931-31027729 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 171, 13 |
| Conread position: | 410-620 |
| Cow position: | chr10:15115324-15115531 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 410-620 |
| Cow position: | chr10:24871596-24871806 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 410-620 |
| Cow position: | chr10:35857346-35857137 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 411-613 |
| Cow position: | chr10:67627276-67627084 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 170, 47 |
| Conread position: | 411-620 |
| Cow position: | chr10:7367074-7366868 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 37 |
| Conread position: | 411-620 |
| Cow position: | chr10:9576329-9576120 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 171, 133 |
| Conread position: | 411-620 |
| Cow position: | chr10:30352553-30352765 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 411-620 |
| Cow position: | chr10:37529560-37529348 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 417-620 |
| Cow position: | chr10:8922985-8923195 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 420-620 |
| Cow position: | chr10:45370776-45370972 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 162, 28 |
| Conread position: | 431-620 |
| Cow position: | chr10:2304647-2304463 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 431-620 |
| Cow position: | chr10:23506756-23506573 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 431-620 |
| Cow position: | chr10:24133091-24132902 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 434-604 |
| Cow position: | chr10:35715978-35715807 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 439-620 |
| Cow position: | chr10:10148389-10148572 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 440-616 |
| Cow position: | chr10:24561248-24561073 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 141, 45 |
| Conread position: | 444-620 |
| Cow position: | chr10:37668416-37668240 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 446-620 |
| Cow position: | chr10:47773481-47773647 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 135, 5 |
| Conread position: | 451-612 |
| Cow position: | chr10:10963736-10963898 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 462-620 |
| Cow position: | chr10:37415546-37415705 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 98 |
| Conread position: | 474-620 |
| Cow position: | chr10:47412335-47412187 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 479-620 |
| Cow position: | chr10:1996887-1996744 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 497-620 |
| Cow position: | chr10:35779109-35778984 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 503-616 |
| Cow position: | chr10:10119997-10120112 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 512-620 |
| Cow position: | chr10:2613174-2613284 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.