Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-273 |
| Cow position: | chr11:33044771-33044491 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 134, 199 |
| Conread position: | 6-296 |
| Cow position: | chr11:10218205-10217910 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 5 |
| Conread position: | 6-300 |
| Cow position: | chr11:43731774-43732066 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 127, 5 |
| Conread position: | 36-275 |
| Cow position: | chr11:28050405-28050158 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 252-451 |
| Cow position: | chr11:85392786-85392585 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 115, 165 |
| Conread position: | 269-448 |
| Cow position: | chr11:23881096-23881271 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 279-427 |
| Cow position: | chr11:10848527-10848676 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 124 |
| Conread position: | 279-427 |
| Cow position: | chr11:72309963-72309814 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 279-428 |
| Cow position: | chr11:4269326-4269176 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 138 |
| Conread position: | 279-445 |
| Cow position: | chr11:41169621-41169454 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr11:11989208-11989376 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 137 |
| Conread position: | 279-448 |
| Cow position: | chr11:24394390-24394558 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 107 |
| Conread position: | 279-448 |
| Cow position: | chr11:58135469-58135638 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 283-432 |
| Cow position: | chr11:38834369-38834219 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 134 |
| Conread position: | 346-619 |
| Cow position: | chr11:77745612-77745333 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 177 |
| Conread position: | 358-620 |
| Cow position: | chr11:62490097-62490356 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 379-620 |
| Cow position: | chr11:74316390-74316636 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 384-620 |
| Cow position: | chr11:21894465-21894228 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 393-609 |
| Cow position: | chr11:46748171-46747951 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 393-619 |
| Cow position: | chr11:80761683-80761456 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 393-620 |
| Cow position: | chr11:34412793-34413022 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 140 |
| Conread position: | 397-619 |
| Cow position: | chr11:33413934-33414160 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 148 |
| Conread position: | 397-619 |
| Cow position: | chr11:41812211-41811989 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 397-619 |
| Cow position: | chr11:50111892-50112111 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 397-619 |
| Cow position: | chr11:73924858-73924639 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 397-619 |
| Cow position: | chr11:76114353-76114577 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 397-620 |
| Cow position: | chr11:287633-287411 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 397-620 |
| Cow position: | chr11:16251553-16251323 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 397-620 |
| Cow position: | chr11:35684798-35684571 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr11:67746978-67747208 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 397-620 |
| Cow position: | chr11:81614928-81614713 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 176, 13 |
| Conread position: | 398-619 |
| Cow position: | chr11:4412318-4412092 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 399-620 |
| Cow position: | chr11:27248195-27248416 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 115 |
| Conread position: | 404-620 |
| Cow position: | chr11:36659104-36658897 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 405-620 |
| Cow position: | chr11:24601674-24601897 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 407-619 |
| Cow position: | chr11:61202872-61203087 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 410-616 |
| Cow position: | chr11:83066209-83066414 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 410-620 |
| Cow position: | chr11:25165159-25165366 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 171, 46 |
| Conread position: | 411-620 |
| Cow position: | chr11:21844418-21844209 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 37 |
| Conread position: | 411-620 |
| Cow position: | chr11:23128821-23128619 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 170, 28 |
| Conread position: | 411-620 |
| Cow position: | chr11:50778084-50778297 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 418-617 |
| Cow position: | chr11:45646869-45646674 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 419-620 |
| Cow position: | chr11:30191892-30192098 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 421-620 |
| Cow position: | chr11:377926-377720 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 421-620 |
| Cow position: | chr11:13043412-13043222 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 421-620 |
| Cow position: | chr11:42793246-42793049 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 160, 17 |
| Conread position: | 421-620 |
| Cow position: | chr11:59156146-59155955 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 160, 90 |
| Conread position: | 422-619 |
| Cow position: | chr11:17831502-17831298 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 167 |
| Conread position: | 423-616 |
| Cow position: | chr11:51144444-51144635 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 423-620 |
| Cow position: | chr11:11232728-11232531 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 428-616 |
| Cow position: | chr11:45898324-45898133 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 431-618 |
| Cow position: | chr11:59370749-59370934 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 432-620 |
| Cow position: | chr11:47544863-47545054 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 436-618 |
| Cow position: | chr11:2917837-2917664 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 442-619 |
| Cow position: | chr11:66188575-66188400 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 442-620 |
| Cow position: | chr11:63516570-63516750 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 451-620 |
| Cow position: | chr11:47899033-47899203 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 131, 5 |
| Conread position: | 458-620 |
| Cow position: | chr11:2925529-2925366 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 461-620 |
| Cow position: | chr11:14094659-14094500 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 461-620 |
| Cow position: | chr11:18341273-18341117 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 115 |
| Conread position: | 462-619 |
| Cow position: | chr11:65762830-65762677 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 474-616 |
| Cow position: | chr11:34145138-34144995 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 485-620 |
| Cow position: | chr11:36238571-36238707 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 487-620 |
| Cow position: | chr11:16843214-16843080 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 488-619 |
| Cow position: | chr11:71493068-71492932 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.