Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-207 |
| Cow position: | chr12:3630823-3631025 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 39-272 |
| Cow position: | chr12:34855494-34855254 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 268-448 |
| Cow position: | chr12:27854612-27854434 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 279-432 |
| Cow position: | chr12:11099588-11099742 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 281-404 |
| Cow position: | chr12:35345901-35346021 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 387-619 |
| Cow position: | chr12:941301-941539 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 392-620 |
| Cow position: | chr12:15938591-15938363 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 393-620 |
| Cow position: | chr12:19691558-19691331 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 55 |
| Conread position: | 393-620 |
| Cow position: | chr12:20326448-20326677 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 397-596 |
| Cow position: | chr12:39486111-39486312 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 397-618 |
| Cow position: | chr12:3578961-3579185 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 397-619 |
| Cow position: | chr12:19869152-19869371 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 397-620 |
| Cow position: | chr12:3880578-3880349 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 397-620 |
| Cow position: | chr12:4008604-4008374 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 80 |
| Conread position: | 397-620 |
| Cow position: | chr12:30753408-30753626 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 173, 51 |
| Conread position: | 397-620 |
| Cow position: | chr12:37770552-37770779 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 50, 149 |
| Conread position: | 397-620 |
| Cow position: | chr12:40910609-40910386 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 117, 139 |
| Conread position: | 397-620 |
| Cow position: | chr12:44622038-44622257 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 399-618 |
| Cow position: | chr12:34148668-34148448 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 106 |
| Conread position: | 399-620 |
| Cow position: | chr12:25561054-25561273 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 401-620 |
| Cow position: | chr12:15173504-15173728 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 133, 114 |
| Conread position: | 401-620 |
| Cow position: | chr12:35771348-35771116 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 410-620 |
| Cow position: | chr12:8869188-8868974 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 410-620 |
| Cow position: | chr12:15530759-15530961 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 171, 48 |
| Conread position: | 411-619 |
| Cow position: | chr12:6720017-6720225 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 162, 26 |
| Conread position: | 411-620 |
| Cow position: | chr12:17031316-17031518 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 413-619 |
| Cow position: | chr12:27563140-27562927 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 413-620 |
| Cow position: | chr12:41083763-41083970 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 417-620 |
| Cow position: | chr12:3510266-3510470 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 41 |
| Conread position: | 418-620 |
| Cow position: | chr12:40270384-40270189 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 419-618 |
| Cow position: | chr12:5905760-5905955 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 29, 95 |
| Conread position: | 420-620 |
| Cow position: | chr12:20777225-20777020 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 424-620 |
| Cow position: | chr12:11109478-11109669 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 438-620 |
| Cow position: | chr12:42879429-42879596 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 144, 65 |
| Conread position: | 442-619 |
| Cow position: | chr12:30662223-30662045 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 445-618 |
| Cow position: | chr12:25177864-25177682 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 451-620 |
| Cow position: | chr12:3994686-3994859 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 119, 5 |
| Conread position: | 456-616 |
| Cow position: | chr12:29162070-29161914 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 114, 64 |
| Conread position: | 462-620 |
| Cow position: | chr12:6226900-6226747 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 471-620 |
| Cow position: | chr12:29770817-29770670 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 42 |
| Conread position: | 477-620 |
| Cow position: | chr12:35377961-35378104 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-620 |
| Cow position: | chr12:30210266-30210385 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 506-620 |
| Cow position: | chr12:36544863-36544747 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.