Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-245 |
| Cow position: | chr13:31832020-31832269 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 21-274 |
| Cow position: | chr13:19438378-19438639 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 31-275 |
| Cow position: | chr13:2305940-2306200 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 181 |
| Conread position: | 279-416 |
| Cow position: | chr13:32736028-32735891 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 279-432 |
| Cow position: | chr13:31508052-31508203 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 279-433 |
| Cow position: | chr13:13901010-13901165 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 279-448 |
| Cow position: | chr13:14401964-14401797 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-487 |
| Cow position: | chr13:4942527-4942738 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 282-404 |
| Cow position: | chr13:34030752-34030873 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 283-448 |
| Cow position: | chr13:34041188-34041023 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 134 |
| Conread position: | 355-620 |
| Cow position: | chr13:13089329-13089071 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 24 |
| Conread position: | 392-620 |
| Cow position: | chr13:19178547-19178318 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 393-620 |
| Cow position: | chr13:15869390-15869166 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 393-620 |
| Cow position: | chr13:38485100-38484875 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 172, 119 |
| Conread position: | 393-620 |
| Cow position: | chr13:51821615-51821846 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 396-620 |
| Cow position: | chr13:25248877-25249113 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 397-610 |
| Cow position: | chr13:52010320-52010526 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 124 |
| Conread position: | 397-612 |
| Cow position: | chr13:24754150-24753932 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 397-618 |
| Cow position: | chr13:61976699-61976919 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 397-619 |
| Cow position: | chr13:6086635-6086857 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 184, 176 |
| Conread position: | 397-619 |
| Cow position: | chr13:12670179-12670401 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 397-619 |
| Cow position: | chr13:17158598-17158830 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 397-619 |
| Cow position: | chr13:33875928-33875711 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 397-619 |
| Cow position: | chr13:34941391-34941607 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 170, 134 |
| Conread position: | 397-619 |
| Cow position: | chr13:55295360-55295578 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 122 |
| Conread position: | 397-620 |
| Cow position: | chr13:311698-311474 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 397-620 |
| Cow position: | chr13:971632-971849 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 397-620 |
| Cow position: | chr13:18835452-18835236 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 397-620 |
| Cow position: | chr13:21276121-21275901 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 397-620 |
| Cow position: | chr13:25434863-25435076 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 397-620 |
| Cow position: | chr13:30651441-30651221 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 101 |
| Conread position: | 397-620 |
| Cow position: | chr13:32717605-32717830 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 117 |
| Conread position: | 397-620 |
| Cow position: | chr13:36771156-36771376 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 110 |
| Conread position: | 397-620 |
| Cow position: | chr13:52585757-52585978 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 175, 20 |
| Conread position: | 398-620 |
| Cow position: | chr13:20863756-20863970 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 399-620 |
| Cow position: | chr13:12546643-12546867 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 399-620 |
| Cow position: | chr13:21235425-21235642 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 400-620 |
| Cow position: | chr13:17820997-17821224 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 401-620 |
| Cow position: | chr13:17291869-17292089 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 112 |
| Conread position: | 401-620 |
| Cow position: | chr13:22085495-22085700 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 180, 50 |
| Conread position: | 401-620 |
| Cow position: | chr13:42860308-42860528 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 402-620 |
| Cow position: | chr13:21287829-21288042 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 410-620 |
| Cow position: | chr13:2414278-2414072 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 160, 107 |
| Conread position: | 410-620 |
| Cow position: | chr13:21210115-21209904 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 410-620 |
| Cow position: | chr13:45022955-45023168 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 410-620 |
| Cow position: | chr13:54095057-54094857 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 411-618 |
| Cow position: | chr13:23479281-23479073 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 411-619 |
| Cow position: | chr13:21904911-21904708 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 159, 27 |
| Conread position: | 411-620 |
| Cow position: | chr13:16343938-16343730 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 411-620 |
| Cow position: | chr13:47756627-47756413 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 411-620 |
| Cow position: | chr13:48251740-48251942 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 415-619 |
| Cow position: | chr13:12614508-12614300 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 418-610 |
| Cow position: | chr13:21241847-21242038 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 420-617 |
| Cow position: | chr13:25062653-25062455 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 125 |
| Conread position: | 420-620 |
| Cow position: | chr13:55673962-55674165 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 420-620 |
| Cow position: | chr13:56686670-56686478 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 425-619 |
| Cow position: | chr13:24586285-24586088 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 428-620 |
| Cow position: | chr13:17816006-17815812 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 428-620 |
| Cow position: | chr13:34263138-34263325 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 429-620 |
| Cow position: | chr13:43184638-43184828 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 431-620 |
| Cow position: | chr13:24369817-24369626 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 431-620 |
| Cow position: | chr13:47963969-47964151 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 436-616 |
| Cow position: | chr13:46182014-46181839 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 443-620 |
| Cow position: | chr13:18172559-18172382 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 138, 84 |
| Conread position: | 443-620 |
| Cow position: | chr13:52199308-52199130 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 138, 63 |
| Conread position: | 462-620 |
| Cow position: | chr13:15528828-15528988 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 471-620 |
| Cow position: | chr13:15991031-15991187 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 504-619 |
| Cow position: | chr13:54583039-54582921 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.