Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-268 |
| Cow position: | chr14:45850515-45850792 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 201 |
| Conread position: | 4-275 |
| Cow position: | chr14:48150654-48150371 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 196 |
| Conread position: | 4-296 |
| Cow position: | chr14:33235290-33235592 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 173 |
| Conread position: | 268-405 |
| Cow position: | chr14:9521708-9521571 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 279-403 |
| Cow position: | chr14:40342078-40342205 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 279-433 |
| Cow position: | chr14:16918700-16918543 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 140 |
| Conread position: | 279-448 |
| Cow position: | chr14:16272278-16272107 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr14:17687515-17687683 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 279-448 |
| Cow position: | chr14:19327245-19327076 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 91, 138 |
| Conread position: | 279-448 |
| Cow position: | chr14:20783485-20783654 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 138 |
| Conread position: | 279-449 |
| Cow position: | chr14:11153132-11152965 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 282-403 |
| Cow position: | chr14:25365466-25365344 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 118 |
| Conread position: | 351-620 |
| Cow position: | chr14:40433288-40433021 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 230, 12 |
| Conread position: | 354-619 |
| Cow position: | chr14:22989404-22989136 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 178 |
| Conread position: | 354-620 |
| Cow position: | chr14:33462525-33462260 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 393-620 |
| Cow position: | chr14:21284957-21284724 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 396-610 |
| Cow position: | chr14:9029358-9029566 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 103 |
| Conread position: | 397-616 |
| Cow position: | chr14:12483987-12484195 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 397-618 |
| Cow position: | chr14:24417208-24416987 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 397-619 |
| Cow position: | chr14:40230313-40230537 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 397-619 |
| Cow position: | chr14:48492461-48492688 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 397-620 |
| Cow position: | chr14:8784499-8784285 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 72 |
| Conread position: | 397-620 |
| Cow position: | chr14:19633504-19633280 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 397-620 |
| Cow position: | chr14:20640297-20640526 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 397-620 |
| Cow position: | chr14:20712358-20712589 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 397-620 |
| Cow position: | chr14:24992136-24991923 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 397-620 |
| Cow position: | chr14:41809328-41809555 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 397-620 |
| Cow position: | chr14:42154637-42154863 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 397-620 |
| Cow position: | chr14:44237376-44237605 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 398-608 |
| Cow position: | chr14:26449069-26448864 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 398-619 |
| Cow position: | chr14:6599629-6599851 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 398-620 |
| Cow position: | chr14:6735543-6735758 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 398-620 |
| Cow position: | chr14:19222202-19221982 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 175, 58 |
| Conread position: | 398-620 |
| Cow position: | chr14:34199519-34199748 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 399-619 |
| Cow position: | chr14:32371425-32371642 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 30 |
| Conread position: | 405-618 |
| Cow position: | chr14:33791507-33791289 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 411-612 |
| Cow position: | chr14:27312734-27312535 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 411-620 |
| Cow position: | chr14:23107636-23107428 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 411-620 |
| Cow position: | chr14:25231339-25231544 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 415-620 |
| Cow position: | chr14:3564579-3564382 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 416-619 |
| Cow position: | chr14:20010007-20010207 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 419-619 |
| Cow position: | chr14:35711878-35712077 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 419-620 |
| Cow position: | chr14:15913252-15913447 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 151, 28 |
| Conread position: | 423-620 |
| Cow position: | chr14:12613805-12613993 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 147, 73 |
| Conread position: | 423-620 |
| Cow position: | chr14:38295978-38296180 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 131 |
| Conread position: | 423-620 |
| Cow position: | chr14:50589094-50589283 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 428-620 |
| Cow position: | chr14:14466187-14466376 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 153, 91 |
| Conread position: | 431-620 |
| Cow position: | chr14:4226905-4227104 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 436-614 |
| Cow position: | chr14:42918375-42918196 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 442-620 |
| Cow position: | chr14:19129789-19129610 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 122, 93 |
| Conread position: | 445-616 |
| Cow position: | chr14:47036525-47036692 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 456-620 |
| Cow position: | chr14:24839914-24840075 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 112, 17 |
| Conread position: | 458-620 |
| Cow position: | chr14:19372605-19372442 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 125, 58 |
| Conread position: | 461-620 |
| Cow position: | chr14:28114924-28115085 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 462-620 |
| Cow position: | chr14:34984122-34983964 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 82 |
| Conread position: | 465-620 |
| Cow position: | chr14:6175838-6175683 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 472-620 |
| Cow position: | chr14:8750322-8750176 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 479-617 |
| Cow position: | chr14:20110479-20110619 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.