Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 1-275 |
| Cow position: | chr15:20080220-20079930 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 207 |
| Conread position: | 4-266 |
| Cow position: | chr15:7894911-7894636 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 201 |
| Conread position: | 4-266 |
| Cow position: | chr15:7927920-7928191 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 4-269 |
| Cow position: | chr15:23157542-23157261 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 207 |
| Conread position: | 4-273 |
| Cow position: | chr15:11624210-11624490 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 130, 80 |
| Conread position: | 52-266 |
| Cow position: | chr15:17272035-17271811 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 18, 150 |
| Conread position: | 53-264 |
| Cow position: | chr15:7933315-7933533 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 147 |
| Conread position: | 69-275 |
| Cow position: | chr15:5070894-5070681 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 268-458 |
| Cow position: | chr15:7235262-7235452 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 8 |
| Conread position: | 269-448 |
| Cow position: | chr15:6154921-6154742 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 148 |
| Conread position: | 279-419 |
| Cow position: | chr15:18577733-18577871 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 129, 93 |
| Conread position: | 279-426 |
| Cow position: | chr15:20361074-20360928 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 123 |
| Conread position: | 279-427 |
| Cow position: | chr15:21664723-21664575 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 137 |
| Conread position: | 279-432 |
| Cow position: | chr15:44071616-44071768 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-433 |
| Cow position: | chr15:19737040-19736885 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr15:2901246-2901076 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 279-448 |
| Cow position: | chr15:4386771-4386943 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 89, 122 |
| Conread position: | 279-448 |
| Cow position: | chr15:20411613-20411782 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 279-457 |
| Cow position: | chr15:6552800-6552623 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-479 |
| Cow position: | chr15:51218739-51218944 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 85 |
| Conread position: | 279-485 |
| Cow position: | chr15:2013574-2013783 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 355-620 |
| Cow position: | chr15:6530428-6530700 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 360-620 |
| Cow position: | chr15:22938931-22939177 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 393-620 |
| Cow position: | chr15:22532615-22532385 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 397-602 |
| Cow position: | chr15:24976821-24977026 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 397-616 |
| Cow position: | chr15:30982284-30982076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 397-618 |
| Cow position: | chr15:13515739-13515518 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 51 |
| Conread position: | 397-618 |
| Cow position: | chr15:28924399-28924616 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 173, 51 |
| Conread position: | 397-619 |
| Cow position: | chr15:30047166-30047394 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-619 |
| Cow position: | chr15:32979664-32979891 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr15:5571266-5571491 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 397-620 |
| Cow position: | chr15:10336121-10335904 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 58 |
| Conread position: | 397-620 |
| Cow position: | chr15:15707751-15707963 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 399-620 |
| Cow position: | chr15:17869926-17870138 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 410-620 |
| Cow position: | chr15:11658209-11658421 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 410-620 |
| Cow position: | chr15:40009293-40009503 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 37, 105 |
| Conread position: | 411-620 |
| Cow position: | chr15:17100360-17100563 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 159, 36 |
| Conread position: | 414-620 |
| Cow position: | chr15:50302539-50302331 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 415-620 |
| Cow position: | chr15:19403329-19403128 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 150, 81 |
| Conread position: | 422-616 |
| Cow position: | chr15:41583255-41583062 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 423-618 |
| Cow position: | chr15:6586369-6586567 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 428-620 |
| Cow position: | chr15:29810448-29810265 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 428-620 |
| Cow position: | chr15:33285221-33285026 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 431-620 |
| Cow position: | chr15:47822135-47821957 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 432-620 |
| Cow position: | chr15:31857927-31857736 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 432-620 |
| Cow position: | chr15:39599775-39599589 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 436-620 |
| Cow position: | chr15:10088644-10088465 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 68 |
| Conread position: | 436-620 |
| Cow position: | chr15:10456682-10456865 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 145, 15 |
| Conread position: | 442-620 |
| Cow position: | chr15:12304965-12304789 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 442-620 |
| Cow position: | chr15:50322919-50322743 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 139, 86 |
| Conread position: | 444-620 |
| Cow position: | chr15:39598560-39598390 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 137, 60 |
| Conread position: | 460-620 |
| Cow position: | chr15:8007287-8007126 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 110, 8 |
| Conread position: | 465-620 |
| Cow position: | chr15:26918972-26919128 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 107 |
Show alignments to all cow chromosomes.