Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 1-197 |
| Cow position: | chr16:27004317-27004515 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 140, 66 |
| Conread position: | 1-273 |
| Cow position: | chr16:9457466-9457742 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 4-258 |
| Cow position: | chr16:41559623-41559881 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 56 |
| Conread position: | 4-273 |
| Cow position: | chr16:51685391-51685661 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 6-275 |
| Cow position: | chr16:55111899-55111619 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 39-276 |
| Cow position: | chr16:24155453-24155212 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 252-403 |
| Cow position: | chr16:3330586-3330736 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 34 |
| Conread position: | 252-462 |
| Cow position: | chr16:34530948-34531154 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 269-433 |
| Cow position: | chr16:2482470-2482307 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 269-448 |
| Cow position: | chr16:29047688-29047864 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 279-398 |
| Cow position: | chr16:52591002-52590883 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 102, 85 |
| Conread position: | 279-432 |
| Cow position: | chr16:43896587-43896435 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-433 |
| Cow position: | chr16:8815428-8815277 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 279-433 |
| Cow position: | chr16:27732709-27732554 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-433 |
| Cow position: | chr16:40295487-40295333 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 71 |
| Conread position: | 279-448 |
| Cow position: | chr16:406364-406195 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr16:15185751-15185921 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 89, 125 |
| Conread position: | 279-448 |
| Cow position: | chr16:25442304-25442471 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-449 |
| Cow position: | chr16:10438932-10439101 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 280-413 |
| Cow position: | chr16:1860908-1861044 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 280-448 |
| Cow position: | chr16:23983974-23984142 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 87, 137 |
| Conread position: | 355-619 |
| Cow position: | chr16:31558571-31558834 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 392-620 |
| Cow position: | chr16:30939448-30939676 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 133 |
| Conread position: | 393-620 |
| Cow position: | chr16:4910816-4910585 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 393-620 |
| Cow position: | chr16:48494841-48494614 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 394-620 |
| Cow position: | chr16:38709110-38708889 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 397-619 |
| Cow position: | chr16:16177535-16177756 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 117 |
| Conread position: | 397-619 |
| Cow position: | chr16:19757067-19756857 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 184, 72 |
| Conread position: | 397-619 |
| Cow position: | chr16:35343756-35343529 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 397-619 |
| Cow position: | chr16:42079120-42078900 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 51 |
| Conread position: | 397-619 |
| Cow position: | chr16:49125801-49125588 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 184, 76 |
| Conread position: | 397-620 |
| Cow position: | chr16:5726649-5726864 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 397-620 |
| Cow position: | chr16:9973783-9973557 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 397-620 |
| Cow position: | chr16:28833561-28833778 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 98 |
| Conread position: | 397-620 |
| Cow position: | chr16:39385120-39385349 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr16:42242399-42242174 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 397-620 |
| Cow position: | chr16:45139387-45139613 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 397-620 |
| Cow position: | chr16:49141839-49141623 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 398-620 |
| Cow position: | chr16:32132249-32132467 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 98 |
| Conread position: | 399-620 |
| Cow position: | chr16:35937057-35937279 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 407-616 |
| Cow position: | chr16:47510239-47510038 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 111 |
| Conread position: | 410-620 |
| Cow position: | chr16:5363621-5363837 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 411-612 |
| Cow position: | chr16:23681105-23681301 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 411-618 |
| Cow position: | chr16:41752840-41752633 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 411-619 |
| Cow position: | chr16:37116807-37117014 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 411-620 |
| Cow position: | chr16:53613032-53613245 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 413-619 |
| Cow position: | chr16:46552556-46552747 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 413-620 |
| Cow position: | chr16:48385666-48385459 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 168, 131 |
| Conread position: | 415-619 |
| Cow position: | chr16:53813922-53813713 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 415-620 |
| Cow position: | chr16:3614485-3614687 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 113 |
| Conread position: | 415-620 |
| Cow position: | chr16:18402433-18402626 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 415-620 |
| Cow position: | chr16:25484105-25484306 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 167, 81 |
| Conread position: | 419-616 |
| Cow position: | chr16:20025185-20025384 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 429-613 |
| Cow position: | chr16:8280038-8279854 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 432-620 |
| Cow position: | chr16:33704552-33704748 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 442-620 |
| Cow position: | chr16:8812322-8812141 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 443-620 |
| Cow position: | chr16:10148048-10148222 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 444-620 |
| Cow position: | chr16:21904930-21905105 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 137, 15 |
| Conread position: | 447-619 |
| Cow position: | chr16:31117851-31117674 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 463-620 |
| Cow position: | chr16:10592226-10592376 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 464-620 |
| Cow position: | chr16:29399781-29399942 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 477-620 |
| Cow position: | chr16:39237743-39237886 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 115 |
| Conread position: | 478-620 |
| Cow position: | chr16:14685588-14685448 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 41 |
| Conread position: | 481-620 |
| Cow position: | chr16:24855344-24855483 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 100, 59 |
Show alignments to all cow chromosomes.