Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 1-246 |
| Cow position: | chr17:44853411-44853158 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 10-266 |
| Cow position: | chr17:14217500-14217228 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 193 |
| Conread position: | 24-274 |
| Cow position: | chr17:6002475-6002205 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 241 |
| Conread position: | 26-276 |
| Cow position: | chr17:4286645-4286898 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 268-448 |
| Cow position: | chr17:40806045-40806223 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 279-448 |
| Cow position: | chr17:3640657-3640489 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 123 |
| Conread position: | 279-448 |
| Cow position: | chr17:6069797-6069959 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 279-448 |
| Cow position: | chr17:15851940-15852109 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 82, 124 |
| Conread position: | 282-433 |
| Cow position: | chr17:15326530-15326681 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 283-448 |
| Cow position: | chr17:24028748-24028588 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 354-620 |
| Cow position: | chr17:9117362-9117629 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 357-620 |
| Cow position: | chr17:3498942-3498681 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 91, 27 |
| Conread position: | 372-620 |
| Cow position: | chr17:20835328-20835579 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 386-620 |
| Cow position: | chr17:21017543-21017779 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 67, 190 |
| Conread position: | 386-620 |
| Cow position: | chr17:31481294-31481053 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 392-619 |
| Cow position: | chr17:29292614-29292385 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 62, 128 |
| Conread position: | 392-620 |
| Cow position: | chr17:38614712-38614941 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 5 |
| Conread position: | 393-620 |
| Cow position: | chr17:3843245-3843462 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 393-620 |
| Cow position: | chr17:8544065-8544290 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 393-620 |
| Cow position: | chr17:23101454-23101226 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 393-620 |
| Cow position: | chr17:25189036-25189270 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 125, 165 |
| Conread position: | 397-618 |
| Cow position: | chr17:3683897-3683678 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 184, 103 |
| Conread position: | 397-619 |
| Cow position: | chr17:20780270-20780492 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 397-619 |
| Cow position: | chr17:24549930-24550158 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 397-620 |
| Cow position: | chr17:1061302-1061077 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 397-620 |
| Cow position: | chr17:1295811-1295587 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 397-620 |
| Cow position: | chr17:18495747-18495538 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 397-620 |
| Cow position: | chr17:18860958-18860740 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 397-620 |
| Cow position: | chr17:20126381-20126595 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 184, 50 |
| Conread position: | 397-620 |
| Cow position: | chr17:20993280-20993057 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 397-620 |
| Cow position: | chr17:21004071-21003846 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 137 |
| Conread position: | 397-620 |
| Cow position: | chr17:21335938-21335712 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 397-620 |
| Cow position: | chr17:21959919-21959704 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 170, 72 |
| Conread position: | 397-620 |
| Cow position: | chr17:24973710-24973934 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 397-620 |
| Cow position: | chr17:27667434-27667206 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 397-620 |
| Cow position: | chr17:36331206-36330976 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 88 |
| Conread position: | 397-620 |
| Cow position: | chr17:38832802-38833025 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 397-620 |
| Cow position: | chr17:40771588-40771819 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 397-620 |
| Cow position: | chr17:42347461-42347243 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 398-620 |
| Cow position: | chr17:11296398-11296622 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 399-620 |
| Cow position: | chr17:28539797-28540012 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 402-620 |
| Cow position: | chr17:30665039-30665254 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 168, 29 |
| Conread position: | 409-610 |
| Cow position: | chr17:23245983-23246184 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 410-620 |
| Cow position: | chr17:9697928-9697716 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 410-620 |
| Cow position: | chr17:9746294-9746497 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 171, 38 |
| Conread position: | 410-620 |
| Cow position: | chr17:11056602-11056388 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 411-620 |
| Cow position: | chr17:8690666-8690459 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 411-620 |
| Cow position: | chr17:24587392-24587604 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 411-620 |
| Cow position: | chr17:32554249-32554042 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 417-620 |
| Cow position: | chr17:13922253-13922461 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 418-620 |
| Cow position: | chr17:25128568-25128366 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 420-619 |
| Cow position: | chr17:13143907-13143709 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 420-620 |
| Cow position: | chr17:3182801-3182602 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 161, 94 |
| Conread position: | 420-620 |
| Cow position: | chr17:8837158-8836967 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 161, 28 |
| Conread position: | 420-620 |
| Cow position: | chr17:33926338-33926144 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 170, 27 |
| Conread position: | 421-620 |
| Cow position: | chr17:25097247-25097445 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 143, 79 |
| Conread position: | 423-620 |
| Cow position: | chr17:32472005-32471802 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 150, 25 |
| Conread position: | 424-619 |
| Cow position: | chr17:4225704-4225514 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 428-620 |
| Cow position: | chr17:27765072-27765252 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 432-620 |
| Cow position: | chr17:33291015-33290833 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 440-610 |
| Cow position: | chr17:9911566-9911735 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 88 |
| Conread position: | 441-620 |
| Cow position: | chr17:1256699-1256521 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 129, 143 |
| Conread position: | 444-620 |
| Cow position: | chr17:4436423-4436250 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 74 |
| Conread position: | 445-616 |
| Cow position: | chr17:24773492-24773658 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 446-619 |
| Cow position: | chr17:12536658-12536487 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 81 |
| Conread position: | 456-620 |
| Cow position: | chr17:908566-908725 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 456-620 |
| Cow position: | chr17:34208000-34207836 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 125, 75 |
| Conread position: | 459-620 |
| Cow position: | chr17:24149000-24149166 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 461-620 |
| Cow position: | chr17:10459111-10458955 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 54 |
| Conread position: | 461-620 |
| Cow position: | chr17:12590988-12591149 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 463-618 |
| Cow position: | chr17:20990367-20990214 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 56 |
| Conread position: | 465-617 |
| Cow position: | chr17:24821695-24821843 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 468-619 |
| Cow position: | chr17:21918042-21917892 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 55 |
| Conread position: | 470-620 |
| Cow position: | chr17:10510828-10510676 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 474-620 |
| Cow position: | chr17:1562936-1562789 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 66 |
| Conread position: | 478-620 |
| Cow position: | chr17:31037538-31037398 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 47 |
Show alignments to all cow chromosomes.