Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 10-210 |
| Cow position: | chr18:39748314-39748522 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 119 |
| Conread position: | 29-274 |
| Cow position: | chr18:16393888-16393629 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 86-275 |
| Cow position: | chr18:29946017-29946199 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 253-404 |
| Cow position: | chr18:37157795-37157644 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 269-448 |
| Cow position: | chr18:16175173-16174996 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 101, 132 |
| Conread position: | 279-433 |
| Cow position: | chr18:36510072-36510227 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-433 |
| Cow position: | chr18:51482314-51482466 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 132, 85 |
| Conread position: | 279-448 |
| Cow position: | chr18:5534466-5534634 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 137 |
| Conread position: | 279-448 |
| Cow position: | chr18:23799105-23799273 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 124 |
| Conread position: | 279-448 |
| Cow position: | chr18:28972429-28972262 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-479 |
| Cow position: | chr18:14417424-14417627 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 165, 136 |
| Conread position: | 283-448 |
| Cow position: | chr18:16089579-16089744 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 120 |
| Conread position: | 283-448 |
| Cow position: | chr18:29865150-29864986 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 64 |
| Conread position: | 354-613 |
| Cow position: | chr18:11831784-11832030 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 354-620 |
| Cow position: | chr18:55782785-55782509 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 355-620 |
| Cow position: | chr18:12118198-12117933 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 387-620 |
| Cow position: | chr18:5486928-5487157 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 392-620 |
| Cow position: | chr18:8105260-8105036 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 393-609 |
| Cow position: | chr18:54646171-54646377 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 177, 114 |
| Conread position: | 393-619 |
| Cow position: | chr18:35636667-35636440 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 393-620 |
| Cow position: | chr18:44549224-44549006 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 121 |
| Conread position: | 393-620 |
| Cow position: | chr18:55505084-55505316 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 397-606 |
| Cow position: | chr18:7950800-7951010 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 173 |
| Conread position: | 397-612 |
| Cow position: | chr18:4884828-4884612 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 397-612 |
| Cow position: | chr18:13172838-13172615 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 397-616 |
| Cow position: | chr18:31672816-31672605 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 397-616 |
| Cow position: | chr18:46108691-46108473 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 397-619 |
| Cow position: | chr18:9010419-9010629 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 184, 99 |
| Conread position: | 397-619 |
| Cow position: | chr18:11867040-11867248 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 184, 11 |
| Conread position: | 397-619 |
| Cow position: | chr18:23766735-23766505 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 397-619 |
| Cow position: | chr18:49665470-49665249 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 397-620 |
| Cow position: | chr18:7955835-7956052 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 185, 51 |
| Conread position: | 397-620 |
| Cow position: | chr18:19850057-19849847 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 184, 24 |
| Conread position: | 397-620 |
| Cow position: | chr18:20174443-20174220 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 397-620 |
| Cow position: | chr18:28101313-28101540 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 397-620 |
| Cow position: | chr18:36458621-36458842 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 397-620 |
| Cow position: | chr18:56361915-56361694 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 399-612 |
| Cow position: | chr18:10656135-10656344 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 182, 126 |
| Conread position: | 401-619 |
| Cow position: | chr18:23447395-23447173 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 409-620 |
| Cow position: | chr18:39875561-39875350 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 411-620 |
| Cow position: | chr18:33157522-33157725 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 411-620 |
| Cow position: | chr18:47931159-47930956 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 413-620 |
| Cow position: | chr18:28924129-28923929 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 415-620 |
| Cow position: | chr18:18919248-18919048 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 415-620 |
| Cow position: | chr18:33299603-33299810 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 85, 92 |
| Conread position: | 417-612 |
| Cow position: | chr18:52632698-52632499 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 420-619 |
| Cow position: | chr18:38985397-38985599 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 420-620 |
| Cow position: | chr18:42479870-42479679 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 28 |
| Conread position: | 423-620 |
| Cow position: | chr18:56159178-56159370 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 424-620 |
| Cow position: | chr18:5578018-5578215 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 157, 18 |
| Conread position: | 429-618 |
| Cow position: | chr18:11691691-11691501 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 18 |
| Conread position: | 442-620 |
| Cow position: | chr18:29796692-29796516 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 447-620 |
| Cow position: | chr18:35582364-35582192 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 92 |
| Conread position: | 461-620 |
| Cow position: | chr18:32883053-32883215 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 470-620 |
| Cow position: | chr18:18592233-18592384 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 111, 99 |
| Conread position: | 472-620 |
| Cow position: | chr18:48829024-48828872 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 476-619 |
| Cow position: | chr18:33896656-33896522 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.