Cow genome map

Conread name: Emb1-C0005215_D03

Conread position: 4-262
Cow position: chr2:43363875-43364144 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 12

Conread position: 4-266
Cow position: chr2:5481461-5481191 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 177
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 196

Conread position: 4-296
Cow position: chr2:38589358-38589651 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 32, 39

Conread position: 6-262
Cow position: chr2:40452696-40452970 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 5

Conread position: 252-448
Cow position: chr2:52063638-52063832 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 115, 15

Conread position: 268-404
Cow position: chr2:35356898-35357033 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 7

Conread position: 278-433
Cow position: chr2:19012265-19012422 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 140

Conread position: 279-433
Cow position: chr2:10264503-10264352 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 279-433
Cow position: chr2:12223374-12223220 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 89, 137

Conread position: 279-433
Cow position: chr2:24925472-24925626 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 87, 137

Conread position: 279-433
Cow position: chr2:24926321-24926475 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 87, 137

Conread position: 279-448
Cow position: chr2:32065134-32064967 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 136, 0

Conread position: 279-480
Cow position: chr2:11158216-11158012 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 165, 122

Conread position: 280-432
Cow position: chr2:80291859-80291706 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 137

Conread position: 280-433
Cow position: chr2:281780-281626 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 87, 137

Conread position: 283-422
Cow position: chr2:6880261-6880399 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 131, 80

Conread position: 285-448
Cow position: chr2:16901166-16901327 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 130, 0

Conread position: 354-620
Cow position: chr2:42255110-42255378 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 30

Conread position: 355-619
Cow position: chr2:51638226-51638497 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 196
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 45, 24

Conread position: 355-620
Cow position: chr2:21284619-21284876 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 93, 28

Conread position: 355-620
Cow position: chr2:42599605-42599874 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 28, 58

Conread position: 355-620
Cow position: chr2:77467774-77467506 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 88, 24

Conread position: 356-619
Cow position: chr2:72527631-72527900 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 41, 28

Conread position: 360-620
Cow position: chr2:7534094-7533827 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 58, 19

Conread position: 362-620
Cow position: chr2:9062957-9063214 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 17

Conread position: 365-610
Cow position: chr2:12762657-12762413 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 10

Conread position: 381-618
Cow position: chr2:73095078-73094850 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 16

Conread position: 392-620
Cow position: chr2:38659067-38658840 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 145, 112

Conread position: 392-620
Cow position: chr2:39941205-39941432 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 5

Conread position: 393-620
Cow position: chr2:42226557-42226327 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 30, 62

Conread position: 393-620
Cow position: chr2:48069686-48069456 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 68

Conread position: 397-610
Cow position: chr2:43624807-43624597 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 115

Conread position: 397-616
Cow position: chr2:21416034-21416243 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 24

Conread position: 397-618
Cow position: chr2:70703974-70704195 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 184, 57

Conread position: 397-619
Cow position: chr2:46294315-46294097 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 46, 38

Conread position: 397-619
Cow position: chr2:52386202-52385976 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 142

Conread position: 397-619
Cow position: chr2:56351196-56350978 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 31

Conread position: 397-619
Cow position: chr2:76340946-76340715 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 26, 130

Conread position: 397-620
Cow position: chr2:549599-549386 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 38

Conread position: 397-620
Cow position: chr2:4254816-4254592 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 157

Conread position: 397-620
Cow position: chr2:14884003-14884226 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 118

Conread position: 397-620
Cow position: chr2:16514509-16514727 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 54

Conread position: 397-620
Cow position: chr2:18997458-18997667 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 184, 42

Conread position: 397-620
Cow position: chr2:20900749-20900520 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 397-620
Cow position: chr2:29268784-29269001 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 184, 39

Conread position: 397-620
Cow position: chr2:32114785-32115019 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 397-620
Cow position: chr2:41451948-41452176 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 61

Conread position: 397-620
Cow position: chr2:45575276-45575054 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 131

Conread position: 397-620
Cow position: chr2:46184554-46184325 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 46, 0

Conread position: 397-620
Cow position: chr2:52344482-52344697 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 112

Conread position: 397-620
Cow position: chr2:69747904-69747677 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 35, 135

Conread position: 397-620
Cow position: chr2:77157634-77157406 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 398-620
Cow position: chr2:40691208-40691431 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 143

Conread position: 398-620
Cow position: chr2:41019480-41019272 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 192, 12

Conread position: 398-620
Cow position: chr2:85339741-85339519 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 31, 25

Conread position: 399-612
Cow position: chr2:26501218-26500998 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 44, 0

Conread position: 399-619
Cow position: chr2:485343-485560 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 165, 22

Conread position: 399-620
Cow position: chr2:1211046-1210823 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 113

Conread position: 399-620
Cow position: chr2:6883949-6884166 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 44, 69

Conread position: 401-620
Cow position: chr2:45623749-45623959 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 69

Conread position: 401-620
Cow position: chr2:47116189-47115977 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 120

Conread position: 405-619
Cow position: chr2:46244298-46244078 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 38, 0

Conread position: 407-620
Cow position: chr2:61974524-61974741 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 36, 0

Conread position: 410-620
Cow position: chr2:16422287-16422496 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 171, 60

Conread position: 410-620
Cow position: chr2:42938567-42938357 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 171, 139

Conread position: 410-620
Cow position: chr2:45311394-45311181 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 411-620
Cow position: chr2:39068043-39068248 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 123, 40

Conread position: 411-620
Cow position: chr2:46189356-46189156 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 18, 13

Conread position: 412-620
Cow position: chr2:11616834-11617039 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 79

Conread position: 413-616
Cow position: chr2:18621142-18621345 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 45

Conread position: 413-620
Cow position: chr2:62978929-62978730 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 40, 107

Conread position: 415-620
Cow position: chr2:46033076-46033274 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 166, 23

Conread position: 416-620
Cow position: chr2:32406425-32406623 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 165, 22

Conread position: 417-620
Cow position: chr2:51594505-51594706 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 27, 43

Conread position: 417-620
Cow position: chr2:52170991-52171199 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 161

Conread position: 419-616
Cow position: chr2:15674289-15674482 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 163, 99

Conread position: 419-620
Cow position: chr2:46995010-46994813 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 29

Conread position: 419-620
Cow position: chr2:51799579-51799382 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 30, 74

Conread position: 420-620
Cow position: chr2:1658242-1658436 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 84

Conread position: 420-620
Cow position: chr2:63568115-63568308 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 161, 92

Conread position: 422-616
Cow position: chr2:28118246-28118434 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 25, 98

Conread position: 423-610
Cow position: chr2:17444540-17444724 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 103

Conread position: 424-620
Cow position: chr2:66404181-66403985 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 146, 95

Conread position: 425-620
Cow position: chr2:43578049-43577855 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 19, 95

Conread position: 428-616
Cow position: chr2:73353539-73353731 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 111

Conread position: 432-620
Cow position: chr2:46330811-46331002 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 441-620
Cow position: chr2:17114971-17114790 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 140, 0

Conread position: 442-620
Cow position: chr2:15329168-15329333 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 139, 69

Conread position: 442-620
Cow position: chr2:69770270-69770445 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 139, 14

Conread position: 443-620
Cow position: chr2:81349118-81348939 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 139, 0

Conread position: 466-617
Cow position: chr2:44051093-44051249 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 478-620
Cow position: chr2:1638400-1638544 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.