Cow genome map
Conread name: | Emb1-C0005215_D03 |
Conread position: | 1-272 |
Cow position: | chr21:36714442-36714722 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 195 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 6, 35 |
Conread position: | 25-297 |
Cow position: | chr21:444964-445244 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 205 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 114, 23 |
Conread position: | 252-478 |
Cow position: | chr21:26836691-26836927 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 165 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 5, 29 |
Conread position: | 279-419 |
Cow position: | chr21:33253716-33253859 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 109 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 88, 124 |
Conread position: | 279-448 |
Cow position: | chr21:5018673-5018842 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 125 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 88, 138 |
Conread position: | 279-448 |
Cow position: | chr21:30563207-30563372 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 124 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 279-448 |
Cow position: | chr21:31514781-31514614 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 123 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 136, 0 |
Conread position: | 282-404 |
Cow position: | chr21:29004001-29003877 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 96 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 283-433 |
Cow position: | chr21:3780311-3780462 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 111 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 77, 134 |
Conread position: | 283-445 |
Cow position: | chr21:2880284-2880125 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 116 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 283-448 |
Cow position: | chr21:40270134-40269968 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 125 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 84, 25 |
Conread position: | 284-433 |
Cow position: | chr21:35145290-35145435 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 111 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 337-619 |
Cow position: | chr21:46912264-46912544 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 199 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 51, 121 |
Conread position: | 354-616 |
Cow position: | chr21:17709565-17709829 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 174 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 28, 64 |
Conread position: | 355-618 |
Cow position: | chr21:641327-641589 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 200 |
Alignm E-value: | 8.99634e-43 |
Alignm gaps (pig, cow): | 93, 24 |
Conread position: | 355-620 |
Cow position: | chr21:20160427-20160683 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 197 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 355-620 |
Cow position: | chr21:24858054-24858318 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 24 |
Conread position: | 358-620 |
Cow position: | chr21:3236278-3236527 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 182 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 394-620 |
Cow position: | chr21:28512314-28512534 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 174 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 52, 17 |
Conread position: | 397-612 |
Cow position: | chr21:5153400-5153627 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 178 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 51, 129 |
Conread position: | 397-618 |
Cow position: | chr21:23192735-23192511 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 397-619 |
Cow position: | chr21:4189617-4189840 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 168 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 45, 123 |
Conread position: | 397-619 |
Cow position: | chr21:21216358-21216139 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 165 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 52, 123 |
Conread position: | 397-619 |
Cow position: | chr21:36163180-36162956 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 170 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 49, 123 |
Conread position: | 397-620 |
Cow position: | chr21:81853-82084 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 182 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 397-620 |
Cow position: | chr21:363438-363655 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 167 |
Alignm E-value: | 9e-32 |
Alignm gaps (pig, cow): | 51, 82 |
Conread position: | 397-620 |
Cow position: | chr21:393804-394024 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 182 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 196 |
Conread position: | 397-620 |
Cow position: | chr21:5455203-5454984 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 168 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 17, 55 |
Conread position: | 397-620 |
Cow position: | chr21:5636938-5636713 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 167 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 51, 118 |
Conread position: | 397-620 |
Cow position: | chr21:7564539-7564312 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 167 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 46, 70 |
Conread position: | 397-620 |
Cow position: | chr21:23683333-23683553 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 168 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 46, 97 |
Conread position: | 397-620 |
Cow position: | chr21:28734129-28733909 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 173 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 52, 129 |
Conread position: | 397-620 |
Cow position: | chr21:36297262-36297495 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 181 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 105, 0 |
Conread position: | 397-620 |
Cow position: | chr21:36795383-36795605 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 166 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 16, 127 |
Conread position: | 397-620 |
Cow position: | chr21:39401383-39401599 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 175 |
Alignm E-value: | 8.99634e-43 |
Alignm gaps (pig, cow): | 184, 51 |
Conread position: | 397-620 |
Cow position: | chr21:45866719-45866937 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 166 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 47, 78 |
Conread position: | 397-620 |
Cow position: | chr21:47802479-47802252 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 125 |
Conread position: | 397-620 |
Cow position: | chr21:48484657-48484442 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 173 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 173, 13 |
Conread position: | 398-620 |
Cow position: | chr21:33209982-33210207 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 398-620 |
Cow position: | chr21:46849339-46849122 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 163 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 50, 128 |
Conread position: | 399-612 |
Cow position: | chr21:34653869-34654073 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 158 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 182, 59 |
Conread position: | 399-620 |
Cow position: | chr21:395663-395875 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 170 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 182, 21 |
Conread position: | 401-619 |
Cow position: | chr21:5344448-5344662 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 169 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 169, 53 |
Conread position: | 405-620 |
Cow position: | chr21:43357468-43357253 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 175 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 165, 42 |
Conread position: | 410-616 |
Cow position: | chr21:1058873-1059079 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 156 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 156, 123 |
Conread position: | 410-618 |
Cow position: | chr21:12961103-12960896 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 166 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 172, 38 |
Conread position: | 410-620 |
Cow position: | chr21:22860798-22861004 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 160 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 171, 109 |
Conread position: | 410-620 |
Cow position: | chr21:29484780-29484984 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 172, 115 |
Conread position: | 411-613 |
Cow position: | chr21:4276797-4276592 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 147 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 49, 171 |
Conread position: | 411-619 |
Cow position: | chr21:11645172-11644966 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 167 |
Alignm E-value: | 8.99634e-43 |
Alignm gaps (pig, cow): | 36, 129 |
Conread position: | 411-620 |
Cow position: | chr21:29002365-29002153 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 168 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 411-620 |
Cow position: | chr21:41579548-41579761 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 165 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 159, 37 |
Conread position: | 415-620 |
Cow position: | chr21:17428305-17428507 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 154 |
Alignm E-value: | 8e-31 |
Alignm gaps (pig, cow): | 33, 13 |
Conread position: | 418-619 |
Cow position: | chr21:35569580-35569377 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 163 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 66, 30 |
Conread position: | 418-620 |
Cow position: | chr21:21077133-21077331 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 156 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 22, 65 |
Conread position: | 418-620 |
Cow position: | chr21:42135820-42135615 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 153 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 422-619 |
Cow position: | chr21:28443571-28443370 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 155 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 422-620 |
Cow position: | chr21:18942021-18941827 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 152 |
Alignm E-value: | 8e-31 |
Alignm gaps (pig, cow): | 26, 57 |
Conread position: | 424-619 |
Cow position: | chr21:18494776-18494973 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 153 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 157, 0 |
Conread position: | 425-620 |
Cow position: | chr21:22353419-22353226 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 147 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 18, 43 |
Conread position: | 430-620 |
Cow position: | chr21:17697045-17696858 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 136 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 27, 49 |
Conread position: | 431-620 |
Cow position: | chr21:17174957-17175156 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 148 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 14, 86 |
Conread position: | 433-620 |
Cow position: | chr21:42023943-42024127 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 144 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 10, 87 |
Conread position: | 448-620 |
Cow position: | chr21:27624547-27624714 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 135 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 134, 26 |
Conread position: | 456-620 |
Cow position: | chr21:13840165-13840330 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 128 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 114, 37 |
Conread position: | 457-620 |
Cow position: | chr21:31511137-31511291 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 127 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 124, 23 |
Conread position: | 478-620 |
Cow position: | chr21:17856408-17856547 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 109 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 89, 0 |
Conread position: | 487-618 |
Cow position: | chr21:27810278-27810411 (view UCSC Genome Browser custom track) |
Alignm length: | 134 |
Alignm identity: | 104 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.