Cow genome map

Conread name: Emb1-C0005215_D03

Conread position: 1-272
Cow position: chr21:36714442-36714722 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 6, 35

Conread position: 25-297
Cow position: chr21:444964-445244 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 114, 23

Conread position: 252-478
Cow position: chr21:26836691-26836927 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 5, 29

Conread position: 279-419
Cow position: chr21:33253716-33253859 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 88, 124

Conread position: 279-448
Cow position: chr21:5018673-5018842 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 88, 138

Conread position: 279-448
Cow position: chr21:30563207-30563372 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 279-448
Cow position: chr21:31514781-31514614 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 136, 0

Conread position: 282-404
Cow position: chr21:29004001-29003877 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 283-433
Cow position: chr21:3780311-3780462 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 77, 134

Conread position: 283-445
Cow position: chr21:2880284-2880125 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 283-448
Cow position: chr21:40270134-40269968 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 25

Conread position: 284-433
Cow position: chr21:35145290-35145435 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 337-619
Cow position: chr21:46912264-46912544 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 121

Conread position: 354-616
Cow position: chr21:17709565-17709829 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 64

Conread position: 355-618
Cow position: chr21:641327-641589 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 93, 24

Conread position: 355-620
Cow position: chr21:20160427-20160683 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 355-620
Cow position: chr21:24858054-24858318 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 24

Conread position: 358-620
Cow position: chr21:3236278-3236527 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 394-620
Cow position: chr21:28512314-28512534 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 17

Conread position: 397-612
Cow position: chr21:5153400-5153627 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 51, 129

Conread position: 397-618
Cow position: chr21:23192735-23192511 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 397-619
Cow position: chr21:4189617-4189840 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 45, 123

Conread position: 397-619
Cow position: chr21:21216358-21216139 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 52, 123

Conread position: 397-619
Cow position: chr21:36163180-36162956 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 49, 123

Conread position: 397-620
Cow position: chr21:81853-82084 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 397-620
Cow position: chr21:363438-363655 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 51, 82

Conread position: 397-620
Cow position: chr21:393804-394024 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 196

Conread position: 397-620
Cow position: chr21:5455203-5454984 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 55

Conread position: 397-620
Cow position: chr21:5636938-5636713 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 118

Conread position: 397-620
Cow position: chr21:7564539-7564312 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 46, 70

Conread position: 397-620
Cow position: chr21:23683333-23683553 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 97

Conread position: 397-620
Cow position: chr21:28734129-28733909 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 129

Conread position: 397-620
Cow position: chr21:36297262-36297495 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 0

Conread position: 397-620
Cow position: chr21:36795383-36795605 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 127

Conread position: 397-620
Cow position: chr21:39401383-39401599 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 184, 51

Conread position: 397-620
Cow position: chr21:45866719-45866937 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 47, 78

Conread position: 397-620
Cow position: chr21:47802479-47802252 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 125

Conread position: 397-620
Cow position: chr21:48484657-48484442 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 173, 13

Conread position: 398-620
Cow position: chr21:33209982-33210207 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 398-620
Cow position: chr21:46849339-46849122 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 128

Conread position: 399-612
Cow position: chr21:34653869-34654073 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 182, 59

Conread position: 399-620
Cow position: chr21:395663-395875 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 182, 21

Conread position: 401-619
Cow position: chr21:5344448-5344662 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 169, 53

Conread position: 405-620
Cow position: chr21:43357468-43357253 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 175
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 165, 42

Conread position: 410-616
Cow position: chr21:1058873-1059079 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 156, 123

Conread position: 410-618
Cow position: chr21:12961103-12960896 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 172, 38

Conread position: 410-620
Cow position: chr21:22860798-22861004 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 171, 109

Conread position: 410-620
Cow position: chr21:29484780-29484984 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 115

Conread position: 411-613
Cow position: chr21:4276797-4276592 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 171

Conread position: 411-619
Cow position: chr21:11645172-11644966 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 36, 129

Conread position: 411-620
Cow position: chr21:29002365-29002153 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 411-620
Cow position: chr21:41579548-41579761 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 159, 37

Conread position: 415-620
Cow position: chr21:17428305-17428507 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 33, 13

Conread position: 418-619
Cow position: chr21:35569580-35569377 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 66, 30

Conread position: 418-620
Cow position: chr21:21077133-21077331 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 65

Conread position: 418-620
Cow position: chr21:42135820-42135615 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 422-619
Cow position: chr21:28443571-28443370 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 21, 0

Conread position: 422-620
Cow position: chr21:18942021-18941827 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 26, 57

Conread position: 424-619
Cow position: chr21:18494776-18494973 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 157, 0

Conread position: 425-620
Cow position: chr21:22353419-22353226 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 18, 43

Conread position: 430-620
Cow position: chr21:17697045-17696858 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 49

Conread position: 431-620
Cow position: chr21:17174957-17175156 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 86

Conread position: 433-620
Cow position: chr21:42023943-42024127 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 10, 87

Conread position: 448-620
Cow position: chr21:27624547-27624714 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 134, 26

Conread position: 456-620
Cow position: chr21:13840165-13840330 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 114, 37

Conread position: 457-620
Cow position: chr21:31511137-31511291 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 124, 23

Conread position: 478-620
Cow position: chr21:17856408-17856547 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 487-618
Cow position: chr21:27810278-27810411 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.