Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-265 |
| Cow position: | chr25:18255681-18255412 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 206 |
| Conread position: | 4-274 |
| Cow position: | chr25:21901758-21902028 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 12-273 |
| Cow position: | chr25:19288660-19288394 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 54-272 |
| Cow position: | chr25:36240271-36240506 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 155 |
| Conread position: | 279-403 |
| Cow position: | chr25:27523198-27523073 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 279-448 |
| Cow position: | chr25:12941261-12941092 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr25:13782457-13782626 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 279-448 |
| Cow position: | chr25:18888334-18888165 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 90, 138 |
| Conread position: | 279-448 |
| Cow position: | chr25:20631034-20631203 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 283-433 |
| Cow position: | chr25:34345582-34345433 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 128 |
| Conread position: | 293-448 |
| Cow position: | chr25:22148965-22149120 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 355-620 |
| Cow position: | chr25:1735633-1735374 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 226, 23 |
| Conread position: | 374-620 |
| Cow position: | chr25:26757134-26757376 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 385-619 |
| Cow position: | chr25:20348563-20348800 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 58, 136 |
| Conread position: | 386-620 |
| Cow position: | chr25:22297308-22297079 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 393-620 |
| Cow position: | chr25:14791466-14791693 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 397-615 |
| Cow position: | chr25:2498979-2499198 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 397-620 |
| Cow position: | chr25:2136076-2136293 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 151, 34 |
| Conread position: | 397-620 |
| Cow position: | chr25:6464312-6464092 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 397-620 |
| Cow position: | chr25:8120494-8120721 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 397-620 |
| Cow position: | chr25:8347226-8347448 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 397-620 |
| Cow position: | chr25:9957317-9957100 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 397-620 |
| Cow position: | chr25:12204187-12204409 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 397-620 |
| Cow position: | chr25:26654624-26654849 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 173, 144 |
| Conread position: | 397-620 |
| Cow position: | chr25:27531551-27531335 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 398-620 |
| Cow position: | chr25:6683343-6683125 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 398-620 |
| Cow position: | chr25:21193225-21192995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 61 |
| Conread position: | 401-620 |
| Cow position: | chr25:787990-788202 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 401-620 |
| Cow position: | chr25:38850769-38850548 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 402-612 |
| Cow position: | chr25:10366030-10365819 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 405-620 |
| Cow position: | chr25:36081600-36081816 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 176, 23 |
| Conread position: | 410-619 |
| Cow position: | chr25:12824285-12824081 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 411-615 |
| Cow position: | chr25:24168167-24167967 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 170, 40 |
| Conread position: | 415-619 |
| Cow position: | chr25:6886242-6886034 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 415-620 |
| Cow position: | chr25:28188213-28188007 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 150, 122 |
| Conread position: | 417-618 |
| Cow position: | chr25:20785844-20785648 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 164, 31 |
| Conread position: | 418-620 |
| Cow position: | chr25:32191409-32191608 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 419-619 |
| Cow position: | chr25:19679081-19679282 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 421-620 |
| Cow position: | chr25:35347646-35347847 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 422-620 |
| Cow position: | chr25:16001779-16001585 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 423-610 |
| Cow position: | chr25:15254588-15254404 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 428-620 |
| Cow position: | chr25:4002544-4002740 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 428-620 |
| Cow position: | chr25:24669682-24669497 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 153, 83 |
| Conread position: | 431-617 |
| Cow position: | chr25:19129604-19129789 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 431-620 |
| Cow position: | chr25:20211335-20211142 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 442-612 |
| Cow position: | chr25:15377096-15377257 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 451-619 |
| Cow position: | chr25:10218278-10218109 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 452-620 |
| Cow position: | chr25:36033209-36033377 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 130, 95 |
Show alignments to all cow chromosomes.