Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-257 |
| Cow position: | chr28:3774159-3773890 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 29, 209 |
| Conread position: | 4-266 |
| Cow position: | chr28:18089324-18089052 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 17-275 |
| Cow position: | chr28:10591680-10591412 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 53, 185 |
| Conread position: | 24-276 |
| Cow position: | chr28:34648633-34648909 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 252-433 |
| Cow position: | chr28:10580491-10580312 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 269-448 |
| Cow position: | chr28:32790994-32790818 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 97, 133 |
| Conread position: | 279-424 |
| Cow position: | chr28:2085872-2086018 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-433 |
| Cow position: | chr28:17389809-17389963 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 137 |
| Conread position: | 279-448 |
| Cow position: | chr28:1166482-1166318 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 279-448 |
| Cow position: | chr28:1216424-1216259 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 279-448 |
| Cow position: | chr28:5112717-5112548 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 138 |
| Conread position: | 279-448 |
| Cow position: | chr28:7003405-7003572 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-448 |
| Cow position: | chr28:8380444-8380615 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr28:17665900-17665729 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 279-449 |
| Cow position: | chr28:3190845-3190675 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-450 |
| Cow position: | chr28:1813522-1813354 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 280-448 |
| Cow position: | chr28:7741843-7742010 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 164, 84 |
| Conread position: | 354-620 |
| Cow position: | chr28:21868130-21868402 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 393-618 |
| Cow position: | chr28:7865049-7865269 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 58 |
| Conread position: | 397-612 |
| Cow position: | chr28:4880539-4880327 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 397-612 |
| Cow position: | chr28:9390640-9390426 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 397-616 |
| Cow position: | chr28:5817572-5817786 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 397-619 |
| Cow position: | chr28:11752420-11752197 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 206 |
| Conread position: | 397-620 |
| Cow position: | chr28:3256526-3256744 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 184, 43 |
| Conread position: | 397-620 |
| Cow position: | chr28:3914435-3914658 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 147, 128 |
| Conread position: | 397-620 |
| Cow position: | chr28:7549337-7549113 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 164 |
| Conread position: | 397-620 |
| Cow position: | chr28:10744930-10745159 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 397-620 |
| Cow position: | chr28:11687300-11687082 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 397-620 |
| Cow position: | chr28:15263999-15263770 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 397-620 |
| Cow position: | chr28:17738354-17738127 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr28:26784743-26784518 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 397-620 |
| Cow position: | chr28:33163733-33163517 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 184, 37 |
| Conread position: | 398-620 |
| Cow position: | chr28:4022108-4022332 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 399-618 |
| Cow position: | chr28:10534202-10533989 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 179, 67 |
| Conread position: | 399-618 |
| Cow position: | chr28:30327357-30327146 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 399-619 |
| Cow position: | chr28:30303466-30303248 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 178, 57 |
| Conread position: | 399-620 |
| Cow position: | chr28:28163823-28164033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 410-620 |
| Cow position: | chr28:2862599-2862812 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 48 |
| Conread position: | 410-620 |
| Cow position: | chr28:16253117-16252913 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 411-616 |
| Cow position: | chr28:8022374-8022167 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 411-619 |
| Cow position: | chr28:27428491-27428689 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 411-620 |
| Cow position: | chr28:11451728-11451516 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 412-610 |
| Cow position: | chr28:29416979-29416778 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 412-619 |
| Cow position: | chr28:10172674-10172468 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 415-616 |
| Cow position: | chr28:6861696-6861897 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 420-620 |
| Cow position: | chr28:3493036-3492838 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 89 |
| Conread position: | 420-620 |
| Cow position: | chr28:13607633-13607832 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 421-620 |
| Cow position: | chr28:26922615-26922420 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 98 |
| Conread position: | 422-616 |
| Cow position: | chr28:26103465-26103651 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 422-620 |
| Cow position: | chr28:25249105-25249300 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 423-620 |
| Cow position: | chr28:22170967-22170769 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 435-620 |
| Cow position: | chr28:5658317-5658498 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 142, 68 |
| Conread position: | 435-620 |
| Cow position: | chr28:9285615-9285427 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 154 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 436-620 |
| Cow position: | chr28:16204570-16204382 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 438-620 |
| Cow position: | chr28:11884757-11884573 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 451-619 |
| Cow position: | chr28:18625003-18625175 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 119, 5 |
| Conread position: | 451-620 |
| Cow position: | chr28:5188621-5188457 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 119, 5 |
| Conread position: | 457-620 |
| Cow position: | chr28:9108227-9108393 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 479-612 |
| Cow position: | chr28:4835038-4834903 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.