Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 1-269 |
| Cow position: | chr29:15950536-15950259 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 6, 66 |
| Conread position: | 4-274 |
| Cow position: | chr29:14013116-14013401 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 204 |
| Conread position: | 4-274 |
| Cow position: | chr29:14073297-14073010 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 206 |
| Conread position: | 31-259 |
| Cow position: | chr29:30108775-30109005 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 108, 5 |
| Conread position: | 60-272 |
| Cow position: | chr29:34609242-34609024 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 252-395 |
| Cow position: | chr29:30259193-30259051 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 252-433 |
| Cow position: | chr29:2101184-2101365 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 252-433 |
| Cow position: | chr29:19654969-19655146 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 159, 7 |
| Conread position: | 267-404 |
| Cow position: | chr29:14112908-14113044 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 267-448 |
| Cow position: | chr29:34798451-34798271 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 279-433 |
| Cow position: | chr29:7429753-7429600 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-433 |
| Cow position: | chr29:15997279-15997126 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 279-448 |
| Cow position: | chr29:5236392-5236561 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-479 |
| Cow position: | chr29:2691534-2691738 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 283-433 |
| Cow position: | chr29:26163459-26163307 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 135 |
| Conread position: | 283-448 |
| Cow position: | chr29:6264625-6264460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 134 |
| Conread position: | 346-610 |
| Cow position: | chr29:45005947-45005695 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 235, 33 |
| Conread position: | 354-620 |
| Cow position: | chr29:19907032-19907295 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 380-620 |
| Cow position: | chr29:39111608-39111375 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 386-619 |
| Cow position: | chr29:2415104-2414875 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 175, 62 |
| Conread position: | 395-620 |
| Cow position: | chr29:1933843-1933614 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 397-612 |
| Cow position: | chr29:4480456-4480240 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 397-616 |
| Cow position: | chr29:26734751-26734965 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 397-619 |
| Cow position: | chr29:22162539-22162314 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 397-620 |
| Cow position: | chr29:9709417-9709635 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 184, 103 |
| Conread position: | 397-620 |
| Cow position: | chr29:31926572-31926349 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 397-620 |
| Cow position: | chr29:35291817-35292028 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 48, 112 |
| Conread position: | 397-620 |
| Cow position: | chr29:40337810-40337589 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 398-606 |
| Cow position: | chr29:18878782-18878570 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 148 |
| Conread position: | 399-620 |
| Cow position: | chr29:16609458-16609682 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 399-620 |
| Cow position: | chr29:26017791-26017562 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 401-620 |
| Cow position: | chr29:40583519-40583733 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 407-620 |
| Cow position: | chr29:26334661-26334448 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 410-620 |
| Cow position: | chr29:19338710-19338927 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 35, 163 |
| Conread position: | 410-620 |
| Cow position: | chr29:21534947-21534736 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 410-620 |
| Cow position: | chr29:26615996-26615782 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 411-609 |
| Cow position: | chr29:5099030-5098831 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 126 |
| Conread position: | 411-620 |
| Cow position: | chr29:7956254-7956046 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 411-620 |
| Cow position: | chr29:12679886-12680098 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 411-620 |
| Cow position: | chr29:12784224-12784016 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 413-620 |
| Cow position: | chr29:41530586-41530787 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 415-620 |
| Cow position: | chr29:29769610-29769411 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 416-619 |
| Cow position: | chr29:31928716-31928921 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 418-620 |
| Cow position: | chr29:22613174-22613366 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 163, 28 |
| Conread position: | 423-612 |
| Cow position: | chr29:32963298-32963488 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 430-612 |
| Cow position: | chr29:20903537-20903353 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 431-620 |
| Cow position: | chr29:34773975-34773794 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 442-620 |
| Cow position: | chr29:4520099-4520275 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 139, 77 |
| Conread position: | 443-620 |
| Cow position: | chr29:24103784-24103605 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 466-620 |
| Cow position: | chr29:6337450-6337601 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 479-620 |
| Cow position: | chr29:3100461-3100317 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 479-620 |
| Cow position: | chr29:25091910-25092052 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 487-617 |
| Cow position: | chr29:32211251-32211119 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.