Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 3-266 |
| Cow position: | chr3:42580404-42580126 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 4-269 |
| Cow position: | chr3:5047622-5047343 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 204 |
| Conread position: | 4-294 |
| Cow position: | chr3:42998285-42997996 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 11-272 |
| Cow position: | chr3:54865113-54864852 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 24 |
| Conread position: | 17-274 |
| Cow position: | chr3:45775493-45775227 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 122, 184 |
| Conread position: | 24-273 |
| Cow position: | chr3:65584031-65583770 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 25-276 |
| Cow position: | chr3:53410506-53410766 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 33-275 |
| Cow position: | chr3:42630603-42630863 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 174 |
| Conread position: | 252-401 |
| Cow position: | chr3:53412390-53412541 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 119, 21 |
| Conread position: | 268-433 |
| Cow position: | chr3:2709591-2709426 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 118 |
| Conread position: | 279-404 |
| Cow position: | chr3:40616559-40616432 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 279-433 |
| Cow position: | chr3:21181406-21181256 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 139, 83 |
| Conread position: | 279-448 |
| Cow position: | chr3:10240940-10241109 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr3:18812785-18812954 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr3:40824679-40824848 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr3:49136278-49136110 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 113 |
| Conread position: | 279-448 |
| Cow position: | chr3:64016078-64015912 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 279-459 |
| Cow position: | chr3:36877365-36877183 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 280-413 |
| Cow position: | chr3:78026125-78025992 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 280-421 |
| Cow position: | chr3:63240958-63240813 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 280-433 |
| Cow position: | chr3:595424-595577 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 136 |
| Conread position: | 346-620 |
| Cow position: | chr3:21341321-21341044 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 351-620 |
| Cow position: | chr3:53790895-53790619 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 354-619 |
| Cow position: | chr3:54782356-54782100 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 93, 25 |
| Conread position: | 378-620 |
| Cow position: | chr3:27274223-27274447 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 392-619 |
| Cow position: | chr3:53593010-53592777 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 393-608 |
| Cow position: | chr3:37186530-37186734 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 393-619 |
| Cow position: | chr3:59514803-59515021 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 393-620 |
| Cow position: | chr3:42603517-42603748 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 150 |
| Conread position: | 393-620 |
| Cow position: | chr3:55190058-55189839 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 119 |
| Conread position: | 395-620 |
| Cow position: | chr3:15052248-15052034 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 186, 28 |
| Conread position: | 397-609 |
| Cow position: | chr3:8753160-8753374 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 397-619 |
| Cow position: | chr3:31047246-31047034 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 184, 50 |
| Conread position: | 397-619 |
| Cow position: | chr3:52017456-52017685 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 167, 42 |
| Conread position: | 397-619 |
| Cow position: | chr3:53112864-53113090 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-619 |
| Cow position: | chr3:79220545-79220771 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 397-620 |
| Cow position: | chr3:2506783-2506558 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 397-620 |
| Cow position: | chr3:18393688-18393470 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 397-620 |
| Cow position: | chr3:26219365-26219134 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 397-620 |
| Cow position: | chr3:49327642-49327859 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 184, 27 |
| Conread position: | 397-620 |
| Cow position: | chr3:49461241-49461012 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 397-620 |
| Cow position: | chr3:53150022-53150246 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 397-620 |
| Cow position: | chr3:59001049-59000834 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 397-620 |
| Cow position: | chr3:65058398-65058619 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 173, 85 |
| Conread position: | 397-620 |
| Cow position: | chr3:70401599-70401819 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 187, 123 |
| Conread position: | 397-620 |
| Cow position: | chr3:71231102-71231316 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 398-617 |
| Cow position: | chr3:81371353-81371560 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 398-620 |
| Cow position: | chr3:19708401-19708186 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 172, 21 |
| Conread position: | 401-619 |
| Cow position: | chr3:33698421-33698646 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 401-620 |
| Cow position: | chr3:6689691-6689919 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 401-620 |
| Cow position: | chr3:26894368-26894579 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 180, 43 |
| Conread position: | 404-620 |
| Cow position: | chr3:80740281-80740481 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 410-618 |
| Cow position: | chr3:15057889-15057693 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 410-620 |
| Cow position: | chr3:73759810-73759598 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 411-620 |
| Cow position: | chr3:56659-56459 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 411-620 |
| Cow position: | chr3:5096913-5097124 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 411-620 |
| Cow position: | chr3:78946129-78945917 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 37, 68 |
| Conread position: | 413-619 |
| Cow position: | chr3:364507-364295 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 413-620 |
| Cow position: | chr3:4031680-4031888 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 35, 106 |
| Conread position: | 415-620 |
| Cow position: | chr3:61467323-61467525 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 166, 20 |
| Conread position: | 416-620 |
| Cow position: | chr3:48296426-48296627 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 165, 40 |
| Conread position: | 417-618 |
| Cow position: | chr3:39970156-39969952 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 161 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 417-620 |
| Cow position: | chr3:58383684-58383884 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 419-618 |
| Cow position: | chr3:59208532-59208730 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 421-619 |
| Cow position: | chr3:10347074-10347272 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 422-620 |
| Cow position: | chr3:28908474-28908286 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 90 |
| Conread position: | 423-616 |
| Cow position: | chr3:5374057-5374246 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 158, 33 |
| Conread position: | 423-620 |
| Cow position: | chr3:68627953-68627769 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 428-620 |
| Cow position: | chr3:54945852-54946046 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 429-620 |
| Cow position: | chr3:44932244-44932430 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 431-619 |
| Cow position: | chr3:70899630-70899811 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 434-618 |
| Cow position: | chr3:83455419-83455236 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 441-620 |
| Cow position: | chr3:61143834-61144018 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 95 |
| Conread position: | 443-620 |
| Cow position: | chr3:22820312-22820486 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 140, 60 |
| Conread position: | 444-620 |
| Cow position: | chr3:13507207-13507382 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 97 |
| Conread position: | 444-620 |
| Cow position: | chr3:23269846-23270016 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 451-610 |
| Cow position: | chr3:78092754-78092600 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 451-620 |
| Cow position: | chr3:15752876-15752717 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 462-620 |
| Cow position: | chr3:4861451-4861605 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 63 |
| Conread position: | 465-620 |
| Cow position: | chr3:11711718-11711879 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 484-620 |
| Cow position: | chr3:15859887-15859751 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 485-620 |
| Cow position: | chr3:70609407-70609542 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 96, 119 |
| Conread position: | 509-620 |
| Cow position: | chr3:74079834-74079721 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 514-620 |
| Cow position: | chr3:23105556-23105448 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.