Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 54-273 |
| Cow position: | chr4:39272522-39272289 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 152 |
| Conread position: | 229-413 |
| Cow position: | chr4:47522404-47522584 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 279-433 |
| Cow position: | chr4:12240130-12239979 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 279-433 |
| Cow position: | chr4:25598395-25598240 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 279-448 |
| Cow position: | chr4:3356843-3356674 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 279-448 |
| Cow position: | chr4:16639700-16639869 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 279-448 |
| Cow position: | chr4:67682287-67682456 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 279-479 |
| Cow position: | chr4:12588422-12588623 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 165, 84 |
| Conread position: | 279-479 |
| Cow position: | chr4:57985082-57985287 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 82, 124 |
| Conread position: | 280-433 |
| Cow position: | chr4:13494421-13494571 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 354-617 |
| Cow position: | chr4:20328046-20327780 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 134 |
| Conread position: | 354-620 |
| Cow position: | chr4:61391535-61391270 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 369-617 |
| Cow position: | chr4:19597628-19597385 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 28 |
| Conread position: | 381-612 |
| Cow position: | chr4:5999497-5999265 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 392-620 |
| Cow position: | chr4:27292255-27292022 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 393-619 |
| Cow position: | chr4:53208009-53208227 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 99 |
| Conread position: | 393-620 |
| Cow position: | chr4:49159068-49158850 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 188, 26 |
| Conread position: | 393-620 |
| Cow position: | chr4:66173089-66172866 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 394-620 |
| Cow position: | chr4:21392095-21391879 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 188, 86 |
| Conread position: | 397-612 |
| Cow position: | chr4:49794393-49794598 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 397-613 |
| Cow position: | chr4:39009681-39009893 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 397-618 |
| Cow position: | chr4:46059029-46058820 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 397-619 |
| Cow position: | chr4:21058673-21058450 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 173, 188 |
| Conread position: | 397-620 |
| Cow position: | chr4:11099953-11099735 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 397-620 |
| Cow position: | chr4:19582904-19582683 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 397-620 |
| Cow position: | chr4:22010346-22010131 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 397-620 |
| Cow position: | chr4:22051755-22051539 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 397-620 |
| Cow position: | chr4:25972611-25972831 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 397-620 |
| Cow position: | chr4:37915617-37915404 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 397-620 |
| Cow position: | chr4:40414919-40414696 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 397-620 |
| Cow position: | chr4:42672883-42673108 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr4:45662788-45662575 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 397-620 |
| Cow position: | chr4:46274905-46275126 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 123 |
| Conread position: | 397-620 |
| Cow position: | chr4:53999808-53999575 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 136 |
| Conread position: | 397-620 |
| Cow position: | chr4:62772223-62771991 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 398-620 |
| Cow position: | chr4:3687641-3687857 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 399-610 |
| Cow position: | chr4:10055925-10056137 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 399-620 |
| Cow position: | chr4:10731933-10732157 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 401-619 |
| Cow position: | chr4:19097008-19097220 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 180, 110 |
| Conread position: | 405-620 |
| Cow position: | chr4:4321286-4321066 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 411-616 |
| Cow position: | chr4:51739977-51739779 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 411-620 |
| Cow position: | chr4:27529839-27530051 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 415-616 |
| Cow position: | chr4:20298999-20299203 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 417-619 |
| Cow position: | chr4:3475362-3475560 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 418-620 |
| Cow position: | chr4:23847318-23847114 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 419-620 |
| Cow position: | chr4:19699833-19700040 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 421-620 |
| Cow position: | chr4:1237380-1237182 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 428-620 |
| Cow position: | chr4:33357674-33357868 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 428-620 |
| Cow position: | chr4:35940268-35940072 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 428-620 |
| Cow position: | chr4:45367479-45367670 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 142, 20 |
| Conread position: | 431-620 |
| Cow position: | chr4:49089540-49089722 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 433-620 |
| Cow position: | chr4:18577029-18576840 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 438-620 |
| Cow position: | chr4:21233118-21232940 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 442-619 |
| Cow position: | chr4:11897541-11897365 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 107 |
| Conread position: | 452-620 |
| Cow position: | chr4:2601998-2602166 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 118, 83 |
| Conread position: | 456-619 |
| Cow position: | chr4:25356534-25356374 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 125, 93 |
| Conread position: | 467-620 |
| Cow position: | chr4:38935141-38935290 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 476-620 |
| Cow position: | chr4:28839418-28839560 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 6 |
| Conread position: | 478-620 |
| Cow position: | chr4:51768906-51769045 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 481-620 |
| Cow position: | chr4:20842717-20842857 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 485-620 |
| Cow position: | chr4:38944464-38944324 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 486-616 |
| Cow position: | chr4:43515524-43515656 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.