Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 1-272 |
| Cow position: | chr5:23227717-23228000 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 94 |
| Conread position: | 3-257 |
| Cow position: | chr5:29454402-29454136 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 136, 6 |
| Conread position: | 3-273 |
| Cow position: | chr5:51162376-51162660 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 100, 202 |
| Conread position: | 3-288 |
| Cow position: | chr5:6188025-6188327 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 4-252 |
| Cow position: | chr5:29008822-29009084 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 26-276 |
| Cow position: | chr5:61020359-61020101 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 37-298 |
| Cow position: | chr5:49101134-49101405 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 268-448 |
| Cow position: | chr5:3502926-3502745 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 99, 140 |
| Conread position: | 268-448 |
| Cow position: | chr5:64780833-64780652 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 100, 150 |
| Conread position: | 269-448 |
| Cow position: | chr5:57481357-57481177 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 135 |
| Conread position: | 269-479 |
| Cow position: | chr5:46737406-46737196 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 133 |
| Conread position: | 279-433 |
| Cow position: | chr5:30580537-30580692 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 138 |
| Conread position: | 280-449 |
| Cow position: | chr5:10855623-10855454 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 137 |
| Conread position: | 346-620 |
| Cow position: | chr5:61839879-61840159 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 109 |
| Conread position: | 354-619 |
| Cow position: | chr5:4218580-4218838 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 355-619 |
| Cow position: | chr5:47313178-47313442 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 355-620 |
| Cow position: | chr5:4797608-4797349 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 356-618 |
| Cow position: | chr5:56070559-56070821 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 362-619 |
| Cow position: | chr5:59326118-59325869 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 372-619 |
| Cow position: | chr5:58229423-58229671 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 375-618 |
| Cow position: | chr5:31640153-31640386 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 392-620 |
| Cow position: | chr5:50533644-50533420 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 54, 123 |
| Conread position: | 393-619 |
| Cow position: | chr5:28330591-28330367 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 393-620 |
| Cow position: | chr5:26377926-26377702 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 119 |
| Conread position: | 393-620 |
| Cow position: | chr5:35826331-35826570 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 393-620 |
| Cow position: | chr5:49558900-49559136 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 394-620 |
| Cow position: | chr5:43474589-43474814 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 126 |
| Conread position: | 397-618 |
| Cow position: | chr5:15598489-15598268 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 397-619 |
| Cow position: | chr5:46104195-46103974 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 133 |
| Conread position: | 397-619 |
| Cow position: | chr5:46510123-46509901 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 397-619 |
| Cow position: | chr5:64321493-64321718 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 397-620 |
| Cow position: | chr5:6045031-6045258 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 397-620 |
| Cow position: | chr5:6086817-6086591 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 397-620 |
| Cow position: | chr5:12672277-12672063 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 397-620 |
| Cow position: | chr5:14314267-14314492 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 397-620 |
| Cow position: | chr5:21944126-21944364 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr5:30276440-30276664 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 397-620 |
| Cow position: | chr5:65933183-65932961 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 399-620 |
| Cow position: | chr5:57935366-57935142 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 401-613 |
| Cow position: | chr5:63917661-63917450 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 401-620 |
| Cow position: | chr5:52165433-52165211 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 409-614 |
| Cow position: | chr5:67243681-67243888 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 409-620 |
| Cow position: | chr5:21828621-21828833 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 409-620 |
| Cow position: | chr5:45940850-45940647 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 410-617 |
| Cow position: | chr5:35684692-35684900 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 183 |
| Conread position: | 410-619 |
| Cow position: | chr5:37377636-37377833 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 171, 38 |
| Conread position: | 410-620 |
| Cow position: | chr5:58855862-58856071 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 171, 115 |
| Conread position: | 411-619 |
| Cow position: | chr5:37814382-37814588 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 34, 96 |
| Conread position: | 411-620 |
| Cow position: | chr5:37645833-37646041 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 411-620 |
| Cow position: | chr5:37714146-37713930 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 411-620 |
| Cow position: | chr5:62172176-62172381 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 414-620 |
| Cow position: | chr5:30253507-30253708 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 167, 59 |
| Conread position: | 417-620 |
| Cow position: | chr5:45036785-45036988 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 419-619 |
| Cow position: | chr5:15426295-15426495 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 162, 36 |
| Conread position: | 423-620 |
| Cow position: | chr5:46122578-46122383 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 158, 24 |
| Conread position: | 441-616 |
| Cow position: | chr5:29212738-29212907 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 442-612 |
| Cow position: | chr5:26262883-26262715 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 443-620 |
| Cow position: | chr5:57271473-57271298 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 444-616 |
| Cow position: | chr5:51053855-51053687 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 451-620 |
| Cow position: | chr5:56518409-56518243 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 130, 5 |
| Conread position: | 452-620 |
| Cow position: | chr5:7044909-7044740 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 462-619 |
| Cow position: | chr5:48010036-48009883 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 469-620 |
| Cow position: | chr5:57576031-57576183 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 112, 35 |
| Conread position: | 471-620 |
| Cow position: | chr5:14629996-14629846 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 481-620 |
| Cow position: | chr5:41010167-41010030 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 100, 111 |
| Conread position: | 488-616 |
| Cow position: | chr5:46512930-46512800 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
Show alignments to all cow chromosomes.