Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 39-273 |
| Cow position: | chr6:42564583-42564831 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 268-448 |
| Cow position: | chr6:3888192-3888016 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 268-489 |
| Cow position: | chr6:24240727-24240949 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 135 |
| Conread position: | 279-404 |
| Cow position: | chr6:7834819-7834943 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 279-417 |
| Cow position: | chr6:34890792-34890652 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 279-433 |
| Cow position: | chr6:52694357-52694512 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 138 |
| Conread position: | 279-448 |
| Cow position: | chr6:50273-50104 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr6:15139843-15139674 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 138 |
| Conread position: | 279-448 |
| Cow position: | chr6:30273563-30273394 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-449 |
| Cow position: | chr6:703544-703714 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 165, 122 |
| Conread position: | 280-448 |
| Cow position: | chr6:8759964-8759798 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 131, 121 |
| Conread position: | 367-620 |
| Cow position: | chr6:52478698-52478433 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 389-618 |
| Cow position: | chr6:20098214-20097985 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 393-620 |
| Cow position: | chr6:44098840-44099068 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 156, 126 |
| Conread position: | 397-616 |
| Cow position: | chr6:53710875-53711092 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 397-619 |
| Cow position: | chr6:4864779-4864568 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 397-619 |
| Cow position: | chr6:11169467-11169678 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 104, 56 |
| Conread position: | 397-620 |
| Cow position: | chr6:2012778-2013000 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 397-620 |
| Cow position: | chr6:8637034-8637256 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 397-620 |
| Cow position: | chr6:12551027-12551249 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 397-620 |
| Cow position: | chr6:16410955-16411172 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 167, 122 |
| Conread position: | 397-620 |
| Cow position: | chr6:23695757-23695975 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 123 |
| Conread position: | 397-620 |
| Cow position: | chr6:32210869-32210647 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 397-620 |
| Cow position: | chr6:36195973-36196193 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 119 |
| Conread position: | 397-620 |
| Cow position: | chr6:40138946-40138735 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 397-620 |
| Cow position: | chr6:44372184-44371965 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 397-620 |
| Cow position: | chr6:65870783-65871011 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 398-620 |
| Cow position: | chr6:54867271-54867495 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 399-619 |
| Cow position: | chr6:51835161-51835378 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 399-620 |
| Cow position: | chr6:642816-642583 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 401-618 |
| Cow position: | chr6:58172948-58173162 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 410-619 |
| Cow position: | chr6:4383265-4383466 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 171, 101 |
| Conread position: | 411-619 |
| Cow position: | chr6:4079610-4079407 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 411-620 |
| Cow position: | chr6:37148970-37149169 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 411-620 |
| Cow position: | chr6:38440955-38441157 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 416-620 |
| Cow position: | chr6:57164208-57164408 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 157, 32 |
| Conread position: | 418-620 |
| Cow position: | chr6:899504-899309 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 419-620 |
| Cow position: | chr6:415877-416080 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 149, 15 |
| Conread position: | 420-620 |
| Cow position: | chr6:15923215-15923018 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 161, 36 |
| Conread position: | 421-620 |
| Cow position: | chr6:51674701-51674894 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 423-619 |
| Cow position: | chr6:66131092-66131286 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 423-620 |
| Cow position: | chr6:55366538-55366335 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 428-620 |
| Cow position: | chr6:57405334-57405142 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 431-620 |
| Cow position: | chr6:61137158-61137355 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 432-616 |
| Cow position: | chr6:38641292-38641471 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 433-619 |
| Cow position: | chr6:20157120-20157311 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 435-619 |
| Cow position: | chr6:48425524-48425341 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 438-619 |
| Cow position: | chr6:58732513-58732326 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 441-620 |
| Cow position: | chr6:33276843-33277024 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 444-620 |
| Cow position: | chr6:53519816-53519642 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 449-620 |
| Cow position: | chr6:47574717-47574887 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 133, 76 |
| Conread position: | 468-620 |
| Cow position: | chr6:11246595-11246744 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 489-619 |
| Cow position: | chr6:17313582-17313714 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.