Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 1-254 |
| Cow position: | chr7:24055981-24056245 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 1-272 |
| Cow position: | chr7:49290289-49290572 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 4-272 |
| Cow position: | chr7:27531166-27530887 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 23-274 |
| Cow position: | chr7:20307077-20306814 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 24-269 |
| Cow position: | chr7:59136143-59136398 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 182 |
| Conread position: | 24-288 |
| Cow position: | chr7:37416735-37417007 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 255 |
| Conread position: | 268-445 |
| Cow position: | chr7:65872197-65872021 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 57 |
| Conread position: | 279-424 |
| Cow position: | chr7:24807061-24806917 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 279-432 |
| Cow position: | chr7:1371224-1371071 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 279-433 |
| Cow position: | chr7:3126110-3126265 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr7:14138173-14138004 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr7:21986825-21986993 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 279-479 |
| Cow position: | chr7:13532492-13532287 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 138 |
| Conread position: | 283-407 |
| Cow position: | chr7:996171-996293 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 355-620 |
| Cow position: | chr7:23619364-23619102 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 355-620 |
| Cow position: | chr7:31171226-31170968 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 355-620 |
| Cow position: | chr7:36665050-36665315 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 393-618 |
| Cow position: | chr7:35275314-35275099 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 58 |
| Conread position: | 393-618 |
| Cow position: | chr7:49750881-49751108 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 393-620 |
| Cow position: | chr7:14536514-14536297 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 393-620 |
| Cow position: | chr7:32914869-32915093 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 127 |
| Conread position: | 393-620 |
| Cow position: | chr7:34412532-34412290 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 394-620 |
| Cow position: | chr7:19267611-19267385 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 397-608 |
| Cow position: | chr7:37718317-37718517 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 184, 112 |
| Conread position: | 397-613 |
| Cow position: | chr7:18248049-18247829 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 397-616 |
| Cow position: | chr7:52785033-52784822 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 184, 16 |
| Conread position: | 397-619 |
| Cow position: | chr7:32894492-32894267 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 191 |
| Conread position: | 397-619 |
| Cow position: | chr7:53097360-53097570 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 184, 106 |
| Conread position: | 397-619 |
| Cow position: | chr7:66894779-66894558 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 397-620 |
| Cow position: | chr7:11870068-11869855 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 176, 91 |
| Conread position: | 397-620 |
| Cow position: | chr7:12994926-12995144 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 13 |
| Conread position: | 397-620 |
| Cow position: | chr7:26632050-26631830 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 397-620 |
| Cow position: | chr7:28584008-28584230 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 117 |
| Conread position: | 397-620 |
| Cow position: | chr7:32819573-32819799 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-620 |
| Cow position: | chr7:37361645-37361864 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 397-620 |
| Cow position: | chr7:56820810-56820588 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 397-620 |
| Cow position: | chr7:64364767-64364545 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 398-620 |
| Cow position: | chr7:4130030-4129800 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 398-620 |
| Cow position: | chr7:21649865-21650086 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 399-619 |
| Cow position: | chr7:15569808-15570024 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 399-620 |
| Cow position: | chr7:27079397-27079610 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 182, 48 |
| Conread position: | 399-620 |
| Cow position: | chr7:46857191-46856976 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 183, 16 |
| Conread position: | 399-620 |
| Cow position: | chr7:60483659-60483443 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 399-620 |
| Cow position: | chr7:65122105-65122326 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 402-613 |
| Cow position: | chr7:39444832-39444626 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 405-613 |
| Cow position: | chr7:42460203-42460407 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 101 |
| Conread position: | 410-620 |
| Cow position: | chr7:3256569-3256370 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 171, 38 |
| Conread position: | 410-620 |
| Cow position: | chr7:17782898-17782695 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 38, 101 |
| Conread position: | 410-620 |
| Cow position: | chr7:40067432-40067643 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 106 |
| Conread position: | 411-617 |
| Cow position: | chr7:40263878-40263667 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 411-619 |
| Cow position: | chr7:39930074-39930274 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 411-620 |
| Cow position: | chr7:147186-147395 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 411-620 |
| Cow position: | chr7:8776974-8777186 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 38, 95 |
| Conread position: | 412-620 |
| Cow position: | chr7:12212830-12212618 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 419-619 |
| Cow position: | chr7:51319583-51319781 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 32 |
| Conread position: | 421-620 |
| Cow position: | chr7:600129-600318 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 421-620 |
| Cow position: | chr7:44596904-44596716 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 160, 27 |
| Conread position: | 423-620 |
| Cow position: | chr7:42894238-42894429 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 430-620 |
| Cow position: | chr7:41315644-41315453 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 436-619 |
| Cow position: | chr7:30156158-30155971 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 441-619 |
| Cow position: | chr7:14174602-14174434 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 32 |
| Conread position: | 441-620 |
| Cow position: | chr7:59168084-59168255 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 140, 76 |
| Conread position: | 457-619 |
| Cow position: | chr7:3773448-3773286 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 125, 89 |
| Conread position: | 460-620 |
| Cow position: | chr7:32372684-32372842 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 59 |
| Conread position: | 468-619 |
| Cow position: | chr7:53763751-53763602 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 113, 6 |
| Conread position: | 474-620 |
| Cow position: | chr7:6820727-6820882 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.