Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 6-275 |
| Cow position: | chr8:46633507-46633233 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 54 |
| Conread position: | 252-432 |
| Cow position: | chr8:33589965-33590144 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 7 |
| Conread position: | 268-448 |
| Cow position: | chr8:24914723-24914545 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 268-479 |
| Cow position: | chr8:14590281-14590066 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 269-410 |
| Cow position: | chr8:46051782-46051925 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 135 |
| Conread position: | 269-448 |
| Cow position: | chr8:38392225-38392403 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 279-433 |
| Cow position: | chr8:39194606-39194451 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-433 |
| Cow position: | chr8:47660714-47660559 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr8:35470909-35471078 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 279-448 |
| Cow position: | chr8:36634902-36634733 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 280-433 |
| Cow position: | chr8:12450652-12450806 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 137 |
| Conread position: | 374-620 |
| Cow position: | chr8:57388996-57389239 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 74, 15 |
| Conread position: | 394-620 |
| Cow position: | chr8:2814345-2814575 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 5, 68 |
| Conread position: | 396-610 |
| Cow position: | chr8:10400032-10400244 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 146 |
| Conread position: | 396-620 |
| Cow position: | chr8:40033089-40032861 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 397-611 |
| Cow position: | chr8:42146035-42145833 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 117, 41 |
| Conread position: | 397-618 |
| Cow position: | chr8:25628077-25628298 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 397-619 |
| Cow position: | chr8:12058443-12058673 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 397-619 |
| Cow position: | chr8:38357120-38356897 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 397-620 |
| Cow position: | chr8:9917622-9917832 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 397-620 |
| Cow position: | chr8:26625604-26625824 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 397-620 |
| Cow position: | chr8:32621267-32621040 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 397-620 |
| Cow position: | chr8:54572376-54572597 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 171, 51 |
| Conread position: | 398-620 |
| Cow position: | chr8:15395124-15394909 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 398-620 |
| Cow position: | chr8:33993899-33994114 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 399-610 |
| Cow position: | chr8:32079953-32079749 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 399-620 |
| Cow position: | chr8:16938718-16938505 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 399-620 |
| Cow position: | chr8:39721397-39721617 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 405-620 |
| Cow position: | chr8:18207410-18207182 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 406-620 |
| Cow position: | chr8:42762687-42762479 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 407-620 |
| Cow position: | chr8:16487563-16487354 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 44 |
| Conread position: | 410-618 |
| Cow position: | chr8:10176401-10176191 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 410-619 |
| Cow position: | chr8:35580888-35580686 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 410-619 |
| Cow position: | chr8:39985990-39985790 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 410-620 |
| Cow position: | chr8:1834664-1834874 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 110 |
| Conread position: | 410-620 |
| Cow position: | chr8:10434551-10434760 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 411-620 |
| Cow position: | chr8:9131185-9130978 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 411-620 |
| Cow position: | chr8:18081279-18081489 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 411-620 |
| Cow position: | chr8:39039773-39039982 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 29 |
| Conread position: | 411-620 |
| Cow position: | chr8:55925942-55926150 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 169 |
| Conread position: | 412-619 |
| Cow position: | chr8:39630515-39630725 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 413-619 |
| Cow position: | chr8:18057489-18057702 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 415-620 |
| Cow position: | chr8:42794562-42794366 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 418-610 |
| Cow position: | chr8:22755775-22755958 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 418-620 |
| Cow position: | chr8:34477865-34478071 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 421-617 |
| Cow position: | chr8:29030342-29030150 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 423-619 |
| Cow position: | chr8:32988501-32988694 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 433-620 |
| Cow position: | chr8:20683738-20683922 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 433-620 |
| Cow position: | chr8:32295973-32295778 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 446-620 |
| Cow position: | chr8:4591293-4591121 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 79 |
| Conread position: | 449-620 |
| Cow position: | chr8:31297052-31297219 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 132, 7 |
| Conread position: | 461-620 |
| Cow position: | chr8:6485141-6484981 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 68 |
| Conread position: | 477-620 |
| Cow position: | chr8:8190257-8190114 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 484-620 |
| Cow position: | chr8:12213829-12213965 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 52 |
Show alignments to all cow chromosomes.