Cow genome map
| Conread name: | Emb1-C0005215_D03 |
| Conread position: | 4-274 |
| Cow position: | chr9:52290172-52290457 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 208 |
| Conread position: | 16-305 |
| Cow position: | chr9:35657511-35657805 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 24-275 |
| Cow position: | chr9:5424621-5424366 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 52 |
| Conread position: | 268-448 |
| Cow position: | chr9:5005235-5005414 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 279-433 |
| Cow position: | chr9:17304715-17304560 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 121 |
| Conread position: | 279-448 |
| Cow position: | chr9:22654839-22655008 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr9:29026947-29026778 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 138 |
| Conread position: | 279-448 |
| Cow position: | chr9:32970204-32970372 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 137 |
| Conread position: | 279-448 |
| Cow position: | chr9:37161550-37161385 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 279-448 |
| Cow position: | chr9:37969948-37969780 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 279-479 |
| Cow position: | chr9:18508563-18508361 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 280-404 |
| Cow position: | chr9:47545461-47545584 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 280-448 |
| Cow position: | chr9:59481536-59481367 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 137 |
| Conread position: | 284-433 |
| Cow position: | chr9:27036167-27036317 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 133 |
| Conread position: | 345-620 |
| Cow position: | chr9:34310399-34310114 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 354-620 |
| Cow position: | chr9:46316432-46316696 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 170 |
| Conread position: | 355-619 |
| Cow position: | chr9:64092036-64091773 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 355-620 |
| Cow position: | chr9:44831707-44831965 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 161, 24 |
| Conread position: | 381-619 |
| Cow position: | chr9:824280-824047 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 392-619 |
| Cow position: | chr9:36490581-36490803 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 5 |
| Conread position: | 393-620 |
| Cow position: | chr9:22361326-22361103 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 394-620 |
| Cow position: | chr9:22114320-22114547 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 54, 149 |
| Conread position: | 396-620 |
| Cow position: | chr9:13169362-13169574 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 397-614 |
| Cow position: | chr9:22616929-22616718 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 184, 45 |
| Conread position: | 397-615 |
| Cow position: | chr9:57951020-57951230 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 397-616 |
| Cow position: | chr9:44467039-44467261 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 397-617 |
| Cow position: | chr9:21459845-21460062 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 397-619 |
| Cow position: | chr9:11299387-11299602 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 397-620 |
| Cow position: | chr9:1951960-1952181 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 184, 114 |
| Conread position: | 397-620 |
| Cow position: | chr9:5433941-5433725 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 172, 54 |
| Conread position: | 397-620 |
| Cow position: | chr9:5501159-5500945 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 397-620 |
| Cow position: | chr9:8998665-8998444 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 101 |
| Conread position: | 397-620 |
| Cow position: | chr9:21030627-21030396 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 397-620 |
| Cow position: | chr9:33218642-33218862 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 397-620 |
| Cow position: | chr9:34666718-34666508 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 184, 94 |
| Conread position: | 397-620 |
| Cow position: | chr9:38344205-38343978 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 397-620 |
| Cow position: | chr9:42998152-42998380 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 398-613 |
| Cow position: | chr9:28948162-28947949 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 398-619 |
| Cow position: | chr9:1950231-1950008 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 398-620 |
| Cow position: | chr9:32812655-32812432 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 58 |
| Conread position: | 399-620 |
| Cow position: | chr9:5226857-5227083 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 399-620 |
| Cow position: | chr9:29006868-29006650 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 400-619 |
| Cow position: | chr9:61022917-61022699 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 401-616 |
| Cow position: | chr9:1855585-1855355 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 410-620 |
| Cow position: | chr9:29034739-29034943 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 411-620 |
| Cow position: | chr9:9405759-9405961 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 414-620 |
| Cow position: | chr9:3070130-3070333 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 419-620 |
| Cow position: | chr9:60037943-60037741 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 425-620 |
| Cow position: | chr9:10877584-10877784 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 428-620 |
| Cow position: | chr9:37069290-37069482 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 434-620 |
| Cow position: | chr9:51620708-51620525 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 147, 77 |
| Conread position: | 437-616 |
| Cow position: | chr9:16182221-16182398 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 145, 76 |
| Conread position: | 442-618 |
| Cow position: | chr9:34287058-34286892 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 442-620 |
| Cow position: | chr9:6225189-6225366 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 125, 14 |
| Conread position: | 442-620 |
| Cow position: | chr9:8546582-8546408 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 444-616 |
| Cow position: | chr9:38846087-38846252 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 444-619 |
| Cow position: | chr9:63905342-63905522 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 444-620 |
| Cow position: | chr9:3782624-3782447 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 126, 12 |
| Conread position: | 446-620 |
| Cow position: | chr9:38875314-38875489 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 451-618 |
| Cow position: | chr9:28735733-28735569 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 451-620 |
| Cow position: | chr9:9595700-9595867 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 123, 5 |
| Conread position: | 461-619 |
| Cow position: | chr9:8563086-8562926 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 462-613 |
| Cow position: | chr9:766906-767058 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 463-619 |
| Cow position: | chr9:40604193-40604033 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 486-620 |
| Cow position: | chr9:17799850-17799717 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 507-619 |
| Cow position: | chr9:61303206-61303092 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.