Cow genome map

Conread name: Emb1-C0005215_G03

Conread position: 12-367
Cow position: chr1:89478408-89478770 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 31

Conread position: 27-189
Cow position: chr1:87460185-87460023 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 143

Conread position: 43-383
Cow position: chr1:52323146-52323494 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 53

Conread position: 76-543
Cow position: chr1:76704064-76703615 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 321
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 7

Conread position: 78-538
Cow position: chr1:67903141-67902670 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 322
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 74, 20

Conread position: 79-535
Cow position: chr1:72134718-72135184 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 16

Conread position: 83-452
Cow position: chr1:23049947-23050301 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 248, 66

Conread position: 83-538
Cow position: chr1:58180459-58180013 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 317
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 112, 29

Conread position: 83-539
Cow position: chr1:25887844-25887389 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 295

Conread position: 83-540
Cow position: chr1:42177077-42176636 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 313
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 112, 66

Conread position: 88-507
Cow position: chr1:61732354-61732780 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 107, 24

Conread position: 90-367
Cow position: chr1:69059732-69060015 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 8, 80

Conread position: 92-500
Cow position: chr1:69288250-69287848 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 271
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 17

Conread position: 125-379
Cow position: chr1:84479140-84479388 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 172
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 123, 50

Conread position: 157-538
Cow position: chr1:33711439-33711807 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 13

Conread position: 169-536
Cow position: chr1:72187493-72187127 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 247
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 29, 123

Conread position: 171-344
Cow position: chr1:28722206-28722378 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 27

Conread position: 171-344
Cow position: chr1:42289813-42289985 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 26

Conread position: 171-353
Cow position: chr1:28802020-28801836 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 23

Conread position: 171-383
Cow position: chr1:45096989-45097200 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 26

Conread position: 171-538
Cow position: chr1:11863895-11863520 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 248
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 39

Conread position: 171-538
Cow position: chr1:67285889-67286248 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 249
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 26, 39

Conread position: 172-516
Cow position: chr1:101760560-101760903 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 220
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 31

Conread position: 172-535
Cow position: chr1:22000567-22000214 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 213, 37

Conread position: 172-539
Cow position: chr1:62806421-62806052 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 248
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 28, 244

Conread position: 173-536
Cow position: chr1:86608591-86608950 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 229
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 165, 20

Conread position: 175-538
Cow position: chr1:18244995-18244643 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 18

Conread position: 176-538
Cow position: chr1:40514100-40513743 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 12

Conread position: 176-538
Cow position: chr1:89740848-89740493 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 97, 17

Conread position: 177-539
Cow position: chr1:72980672-72981021 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 239
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 176, 32

Conread position: 188-411
Cow position: chr1:53364100-53364320 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 9, 22

Conread position: 189-366
Cow position: chr1:77122173-77122004 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 189-535
Cow position: chr1:85781372-85781037 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 226
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 164, 20

Conread position: 189-538
Cow position: chr1:55324123-55323773 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 21

Conread position: 190-536
Cow position: chr1:17942422-17942068 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 232
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 186, 12

Conread position: 193-509
Cow position: chr1:40907529-40907845 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 195, 27

Conread position: 193-535
Cow position: chr1:34688764-34689095 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 16

Conread position: 194-344
Cow position: chr1:38414247-38414396 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 194-536
Cow position: chr1:25549471-25549807 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 224
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 159, 15

Conread position: 194-536
Cow position: chr1:57367725-57367388 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 27, 8

Conread position: 194-538
Cow position: chr1:101858552-101858234 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 191, 19

Conread position: 195-344
Cow position: chr1:18406761-18406613 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 195-344
Cow position: chr1:52233668-52233520 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 195-398
Cow position: chr1:59672500-59672698 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 157, 14

Conread position: 195-533
Cow position: chr1:82919232-82918908 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 193, 18

Conread position: 195-538
Cow position: chr1:62854402-62854081 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 195-538
Cow position: chr1:87244217-87244545 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 195-538
Cow position: chr1:88634807-88635124 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 236
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 193, 18

Conread position: 195-538
Cow position: chr1:89900272-89899955 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 240
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 199, 18

Conread position: 195-538
Cow position: chr1:97123262-97123579 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 199, 18

Conread position: 195-538
Cow position: chr1:101149265-101149589 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 206-529
Cow position: chr1:53046523-53046204 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 225, 44

Conread position: 214-517
Cow position: chr1:86699796-86699493 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 13, 134

Conread position: 218-537
Cow position: chr1:37420544-37420226 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 150

Conread position: 220-528
Cow position: chr1:37455147-37455449 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 155, 114

Conread position: 221-516
Cow position: chr1:98661861-98661565 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 198
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 148

Conread position: 224-536
Cow position: chr1:79637502-79637187 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 222
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 164, 38

Conread position: 226-534
Cow position: chr1:57655964-57656302 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 226-534
Cow position: chr1:62245212-62244908 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 127, 161

Conread position: 226-535
Cow position: chr1:56194493-56194188 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 209
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 133, 150

Conread position: 226-535
Cow position: chr1:79457529-79457224 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 127, 143

Conread position: 226-536
Cow position: chr1:3934706-3934409 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 174, 120

Conread position: 226-536
Cow position: chr1:13253993-13253687 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 127, 143

Conread position: 226-536
Cow position: chr1:25180593-25180287 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 127, 178

Conread position: 226-536
Cow position: chr1:33550360-33550667 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 121

Conread position: 226-536
Cow position: chr1:42735895-42736201 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 209
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 127, 187

Conread position: 226-536
Cow position: chr1:49974749-49974444 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 128, 91

Conread position: 226-536
Cow position: chr1:55775596-55775898 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 202
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 140

Conread position: 226-536
Cow position: chr1:63606345-63606039 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 127, 150

Conread position: 226-536
Cow position: chr1:69402431-69402736 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 186

Conread position: 226-536
Cow position: chr1:69923026-69922719 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 10, 141

Conread position: 226-536
Cow position: chr1:72079920-72080222 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 139, 120

Conread position: 226-536
Cow position: chr1:76623506-76623201 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 127, 113

Conread position: 226-536
Cow position: chr1:76753211-76752906 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 127, 186

Conread position: 226-536
Cow position: chr1:79336356-79336060 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 127, 143

Conread position: 226-536
Cow position: chr1:85881189-85881495 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 127, 150

Conread position: 226-536
Cow position: chr1:88130199-88130502 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 127, 178

Conread position: 226-536
Cow position: chr1:93853959-93854264 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 23

Conread position: 226-536
Cow position: chr1:94659315-94659621 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 102, 96

Conread position: 226-536
Cow position: chr1:100597943-100597638 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 127, 31

Conread position: 247-534
Cow position: chr1:58335295-58335579 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 106, 157

Conread position: 247-536
Cow position: chr1:3386547-3386262 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 106, 122

Conread position: 247-536
Cow position: chr1:57567408-57567694 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 187
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 171, 107

Conread position: 250-538
Cow position: chr1:72119622-72119899 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 87, 77

Conread position: 264-536
Cow position: chr1:28872552-28872821 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 106

Conread position: 267-536
Cow position: chr1:97227229-97226956 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 84

Conread position: 277-536
Cow position: chr1:73071528-73071273 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 88, 69

Conread position: 295-535
Cow position: chr1:31366587-31366335 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 303-538
Cow position: chr1:102555605-102555838 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 62

Conread position: 325-535
Cow position: chr1:30027995-30027789 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 96, 38

Conread position: 431-538
Cow position: chr1:52233460-52233353 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 431-538
Cow position: chr1:69536542-69536649 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.