Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 11-500 |
| Cow position: | chr11:7306656-7306171 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 30 |
| Conread position: | 77-536 |
| Cow position: | chr11:7686841-7687320 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 185 |
| Conread position: | 81-534 |
| Cow position: | chr11:65162582-65162130 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 83-538 |
| Cow position: | chr11:44507137-44507582 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 305 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 83-540 |
| Cow position: | chr11:49076694-49076252 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 91-538 |
| Cow position: | chr11:72017177-72017636 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 85, 341 |
| Conread position: | 94-538 |
| Cow position: | chr11:87126820-87127255 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 292 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 102-512 |
| Cow position: | chr11:25180067-25180462 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 74, 184 |
| Conread position: | 109-539 |
| Cow position: | chr11:81853618-81853179 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 112 |
| Conread position: | 170-536 |
| Cow position: | chr11:26125888-26125522 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 171-538 |
| Cow position: | chr11:8262654-8262286 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 172-383 |
| Cow position: | chr11:30126243-30126034 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 172-517 |
| Cow position: | chr11:58133401-58133745 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 172-536 |
| Cow position: | chr11:29669583-29669223 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 172-538 |
| Cow position: | chr11:24677114-24677465 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 173-521 |
| Cow position: | chr11:7112498-7112849 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 173-540 |
| Cow position: | chr11:32682722-32683103 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 175-538 |
| Cow position: | chr11:72005098-72005449 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 176-531 |
| Cow position: | chr11:25526653-25526978 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 176-538 |
| Cow position: | chr11:21440683-21441031 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 176-538 |
| Cow position: | chr11:28062723-28063098 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 177-538 |
| Cow position: | chr11:10210911-10210551 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 177-538 |
| Cow position: | chr11:52462123-52462504 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 177-541 |
| Cow position: | chr11:44496531-44496168 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 163, 16 |
| Conread position: | 181-538 |
| Cow position: | chr11:24242510-24242854 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 234, 12 |
| Conread position: | 189-452 |
| Cow position: | chr11:56178984-56179240 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 190-536 |
| Cow position: | chr11:77729459-77729120 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 163, 12 |
| Conread position: | 193-538 |
| Cow position: | chr11:9220948-9220607 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 16 |
| Conread position: | 193-538 |
| Cow position: | chr11:12092824-12093169 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 193-538 |
| Cow position: | chr11:42428410-42428744 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 231, 16 |
| Conread position: | 195-383 |
| Cow position: | chr11:21466178-21466364 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-495 |
| Cow position: | chr11:12352216-12351932 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 195-536 |
| Cow position: | chr11:15997983-15998298 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr11:8888071-8887742 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 18 |
| Conread position: | 195-538 |
| Cow position: | chr11:34019989-34020317 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 197-536 |
| Cow position: | chr11:30304353-30304673 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 169, 16 |
| Conread position: | 204-416 |
| Cow position: | chr11:75919636-75919849 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 184, 9 |
| Conread position: | 204-541 |
| Cow position: | chr11:9158334-9158003 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 214-538 |
| Cow position: | chr11:54208704-54209035 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 214-538 |
| Cow position: | chr11:76375380-76375061 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 95 |
| Conread position: | 226-498 |
| Cow position: | chr11:8243805-8244072 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 226-535 |
| Cow position: | chr11:4271736-4271423 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 224 |
| Conread position: | 226-536 |
| Cow position: | chr11:12359319-12359016 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr11:19103386-19103080 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 135, 120 |
| Conread position: | 226-536 |
| Cow position: | chr11:23876404-23876710 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr11:24392427-24392732 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 185 |
| Conread position: | 226-536 |
| Cow position: | chr11:37093962-37093656 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr11:38836317-38836011 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 127, 187 |
| Conread position: | 226-536 |
| Cow position: | chr11:41171577-41171287 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 226-536 |
| Cow position: | chr11:43515553-43515223 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 111, 96 |
| Conread position: | 226-536 |
| Cow position: | chr11:53432669-53432363 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 186 |
| Conread position: | 226-536 |
| Cow position: | chr11:71328746-71329048 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 127, 178 |
| Conread position: | 226-536 |
| Cow position: | chr11:72110859-72110553 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-545 |
| Cow position: | chr11:10846553-10846860 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 127, 61 |
| Conread position: | 228-538 |
| Cow position: | chr11:7394228-7394524 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 160, 26 |
| Conread position: | 240-536 |
| Cow position: | chr11:85394695-85394403 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 248-543 |
| Cow position: | chr11:4028428-4028137 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 78 |
| Conread position: | 251-536 |
| Cow position: | chr11:28055468-28055188 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 71 |
| Conread position: | 334-541 |
| Cow position: | chr11:67449691-67449908 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 431-539 |
| Cow position: | chr11:21466384-21466492 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 442-539 |
| Cow position: | chr11:17220893-17220796 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.