Cow genome map

Conread name: Emb1-C0005215_G03

Conread position: 60-530
Cow position: chr15:36627741-36627260 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 17

Conread position: 71-533
Cow position: chr15:38958146-38957681 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 241

Conread position: 76-538
Cow position: chr15:323809-324278 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 7

Conread position: 77-292
Cow position: chr15:27065161-27064940 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 96, 139

Conread position: 77-539
Cow position: chr15:21816860-21816388 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 172

Conread position: 81-513
Cow position: chr15:32605930-32605504 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 295
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 11

Conread position: 83-503
Cow position: chr15:45885712-45886128 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 281
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 145, 38

Conread position: 83-512
Cow position: chr15:1236316-1236754 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 321

Conread position: 83-538
Cow position: chr15:4631033-4630562 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 56

Conread position: 83-538
Cow position: chr15:10479797-10479340 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 113

Conread position: 83-541
Cow position: chr15:11299803-11299355 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 85

Conread position: 88-538
Cow position: chr15:12613971-12614425 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 317
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 70, 49

Conread position: 89-516
Cow position: chr15:1662294-1662723 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 280
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 65

Conread position: 93-537
Cow position: chr15:15266891-15266435 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 97-539
Cow position: chr15:21447979-21448427 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 19

Conread position: 170-352
Cow position: chr15:7232896-7233076 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 171-342
Cow position: chr15:7895184-7895014 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 21

Conread position: 171-531
Cow position: chr15:32680574-32680200 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 26, 39

Conread position: 171-538
Cow position: chr15:4794683-4795033 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 6, 26

Conread position: 171-538
Cow position: chr15:21960523-21960864 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 6, 26

Conread position: 171-538
Cow position: chr15:24793051-24793408 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 256
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 26, 39

Conread position: 172-536
Cow position: chr15:35754823-35754474 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 239
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 264, 17

Conread position: 172-536
Cow position: chr15:36641623-36641983 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 37

Conread position: 172-538
Cow position: chr15:32692532-32692912 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 172-540
Cow position: chr15:8407546-8407927 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 253
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 140, 14

Conread position: 174-508
Cow position: chr15:53338043-53338384 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 36

Conread position: 174-538
Cow position: chr15:35734460-35734816 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 19

Conread position: 174-538
Cow position: chr15:37391499-37391859 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 84, 39

Conread position: 175-537
Cow position: chr15:8098469-8098836 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 18

Conread position: 175-538
Cow position: chr15:35681653-35681305 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 238
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 256, 10

Conread position: 176-344
Cow position: chr15:6077755-6077920 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 176-535
Cow position: chr15:370686-370316 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 160, 17

Conread position: 189-535
Cow position: chr15:35649196-35648866 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 25

Conread position: 189-537
Cow position: chr15:52635166-52635516 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 189-548
Cow position: chr15:2923515-2923876 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 242, 20

Conread position: 191-534
Cow position: chr15:1763089-1763437 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 0

Conread position: 193-452
Cow position: chr15:16506164-16506422 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 127, 16

Conread position: 193-535
Cow position: chr15:4648859-4649190 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 226
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 193-538
Cow position: chr15:4677529-4677857 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 212
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 193-538
Cow position: chr15:6387289-6386942 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 9

Conread position: 193-538
Cow position: chr15:40104473-40104802 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 233, 16

Conread position: 195-342
Cow position: chr15:3038466-3038320 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 195-343
Cow position: chr15:23158069-23157922 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 195-344
Cow position: chr15:25135429-25135281 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 195-422
Cow position: chr15:25790452-25790228 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 49, 18

Conread position: 195-531
Cow position: chr15:6278229-6277911 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 195-538
Cow position: chr15:10788066-10787738 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 237
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 195-538
Cow position: chr15:36647952-36648265 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 202-538
Cow position: chr15:7927651-7927982 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 212
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 168, 59

Conread position: 212-538
Cow position: chr15:6371800-6371488 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 176, 202

Conread position: 213-538
Cow position: chr15:6456321-6456641 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 181, 32

Conread position: 213-545
Cow position: chr15:6184152-6184461 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 175, 0

Conread position: 214-536
Cow position: chr15:2075689-2076006 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 13, 192

Conread position: 217-504
Cow position: chr15:491135-490833 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 117, 80

Conread position: 219-438
Cow position: chr15:21623172-21623391 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 220-535
Cow position: chr15:18333790-18333479 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 211
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 82, 131

Conread position: 220-538
Cow position: chr15:327445-327761 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 211, 28

Conread position: 226-535
Cow position: chr15:7836288-7836590 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 200, 84

Conread position: 226-535
Cow position: chr15:12422120-12421815 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 127, 178

Conread position: 226-536
Cow position: chr15:525804-525503 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 61, 38

Conread position: 226-536
Cow position: chr15:6554814-6554503 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 168, 98

Conread position: 226-536
Cow position: chr15:15348077-15347771 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 206
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 139, 120

Conread position: 226-536
Cow position: chr15:17040205-17039902 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 120

Conread position: 226-536
Cow position: chr15:18575767-18576070 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 168, 120

Conread position: 226-536
Cow position: chr15:21666975-21666670 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 112, 34

Conread position: 226-536
Cow position: chr15:31357947-31358253 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 205, 127

Conread position: 226-536
Cow position: chr15:32495339-32495036 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 127, 175

Conread position: 226-536
Cow position: chr15:42490249-42490554 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 202, 120

Conread position: 226-536
Cow position: chr15:51215636-51215943 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 205, 120

Conread position: 226-545
Cow position: chr15:317284-316971 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 211
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 139, 120

Conread position: 226-545
Cow position: chr15:4384317-4384633 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 90, 144

Conread position: 233-536
Cow position: chr15:10887643-10887959 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 120, 301

Conread position: 233-538
Cow position: chr15:4960721-4961014 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 6, 16

Conread position: 240-542
Cow position: chr15:44068856-44069149 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 199
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 298, 106

Conread position: 244-538
Cow position: chr15:685223-685517 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 188, 45

Conread position: 248-536
Cow position: chr15:4764280-4764564 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 11, 18

Conread position: 249-538
Cow position: chr15:2006609-2006891 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 189
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 19

Conread position: 254-536
Cow position: chr15:24294173-24294440 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 168, 48

Conread position: 258-538
Cow position: chr15:7933056-7933329 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 80, 68

Conread position: 267-519
Cow position: chr15:14583532-14583266 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 267-536
Cow position: chr15:44827889-44828164 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 67

Conread position: 286-539
Cow position: chr15:2011189-2011444 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 23

Conread position: 300-539
Cow position: chr15:51799858-51800100 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 132, 65

Conread position: 312-538
Cow position: chr15:49676164-49676391 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 119, 67

Conread position: 431-537
Cow position: chr15:8001003-8000897 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 92
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 431-538
Cow position: chr15:6650802-6650695 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 431-538
Cow position: chr15:25789946-25789839 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.