Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 3-186 |
| Cow position: | chr16:49237014-49236832 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 131 |
| Conread position: | 7-539 |
| Cow position: | chr16:32934607-32935154 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 22-383 |
| Cow position: | chr16:25152318-25152691 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 163 |
| Conread position: | 29-434 |
| Cow position: | chr16:44673496-44673903 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 21, 61 |
| Conread position: | 77-414 |
| Cow position: | chr16:5888000-5888347 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 77-434 |
| Cow position: | chr16:49955972-49955624 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 149 |
| Conread position: | 77-539 |
| Cow position: | chr16:36233062-36232592 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 81-538 |
| Cow position: | chr16:334540-334980 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 56 |
| Conread position: | 83-536 |
| Cow position: | chr16:44964602-44965052 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 83-539 |
| Cow position: | chr16:29981816-29982282 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 93-535 |
| Cow position: | chr16:9929129-9929557 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 114, 76 |
| Conread position: | 159-359 |
| Cow position: | chr16:44388902-44388699 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 171-538 |
| Cow position: | chr16:19714192-19713843 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 172-384 |
| Cow position: | chr16:15368930-15369134 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 172-428 |
| Cow position: | chr16:49257953-49257703 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 166, 21 |
| Conread position: | 172-536 |
| Cow position: | chr16:1429858-1430230 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 172-538 |
| Cow position: | chr16:51685097-51685454 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 173-513 |
| Cow position: | chr16:5588842-5589180 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 164 |
| Conread position: | 173-534 |
| Cow position: | chr16:16029421-16029766 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 173-538 |
| Cow position: | chr16:29031562-29031921 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 176-343 |
| Cow position: | chr16:28234003-28233849 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 176-539 |
| Cow position: | chr16:18688483-18688112 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 188-548 |
| Cow position: | chr16:51083230-51083591 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 197, 23 |
| Conread position: | 193-534 |
| Cow position: | chr16:40887587-40887261 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 205, 21 |
| Conread position: | 193-538 |
| Cow position: | chr16:25084285-25084626 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 176, 16 |
| Conread position: | 193-538 |
| Cow position: | chr16:49236450-49236108 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 20 |
| Conread position: | 194-536 |
| Cow position: | chr16:9776803-9777134 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 194-538 |
| Cow position: | chr16:16687536-16687872 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 195-533 |
| Cow position: | chr16:36282090-36282396 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr16:20255631-20255302 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr16:29676629-29676300 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 199, 19 |
| Conread position: | 195-538 |
| Cow position: | chr16:39818302-39818629 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 193, 20 |
| Conread position: | 207-427 |
| Cow position: | chr16:12302779-12302558 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 159 |
| Conread position: | 214-536 |
| Cow position: | chr16:7677011-7676691 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 220-536 |
| Cow position: | chr16:25440307-25440617 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 180, 125 |
| Conread position: | 226-505 |
| Cow position: | chr16:29045728-29046003 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-522 |
| Cow position: | chr16:2412318-2412028 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 127, 96 |
| Conread position: | 226-536 |
| Cow position: | chr16:408333-408029 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 226-536 |
| Cow position: | chr16:1568746-1568447 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 226-536 |
| Cow position: | chr16:2484440-2484134 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 179 |
| Conread position: | 226-536 |
| Cow position: | chr16:2728618-2728310 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 122 |
| Conread position: | 226-536 |
| Cow position: | chr16:10204719-10204412 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 134, 120 |
| Conread position: | 226-536 |
| Cow position: | chr16:12539226-12538922 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 154 |
| Conread position: | 226-536 |
| Cow position: | chr16:14667091-14666785 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 130, 179 |
| Conread position: | 226-536 |
| Cow position: | chr16:15183504-15183809 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 111, 63 |
| Conread position: | 226-536 |
| Cow position: | chr16:15565450-15565753 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 226-536 |
| Cow position: | chr16:25458777-25458472 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 226-536 |
| Cow position: | chr16:40297476-40297172 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 156, 148 |
| Conread position: | 227-502 |
| Cow position: | chr16:37446649-37446384 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 139, 119 |
| Conread position: | 227-536 |
| Cow position: | chr16:28472398-28472093 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 126, 142 |
| Conread position: | 233-409 |
| Cow position: | chr16:52816353-52816181 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 251-538 |
| Cow position: | chr16:42051625-42051338 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 136 |
| Conread position: | 302-536 |
| Cow position: | chr16:31593142-31592903 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 304-545 |
| Cow position: | chr16:25157450-25157205 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 349-542 |
| Cow position: | chr16:31376413-31376218 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 394-538 |
| Cow position: | chr16:42740554-42740412 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.