Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 1-539 |
| Cow position: | chr2:783038-782492 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 49-434 |
| Cow position: | chr2:25244118-25244501 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 70-535 |
| Cow position: | chr2:32388320-32388801 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 151 |
| Conread position: | 76-540 |
| Cow position: | chr2:7210201-7210668 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 143 |
| Conread position: | 77-538 |
| Cow position: | chr2:54650014-54649564 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 96 |
| Conread position: | 77-538 |
| Cow position: | chr2:75677091-75676629 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 96, 146 |
| Conread position: | 83-533 |
| Cow position: | chr2:42334485-42334036 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 83-538 |
| Cow position: | chr2:20904335-20903889 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 135 |
| Conread position: | 83-540 |
| Cow position: | chr2:73190637-73191078 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 92, 220 |
| Conread position: | 88-540 |
| Cow position: | chr2:46466700-46466258 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 112-531 |
| Cow position: | chr2:63293763-63293345 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 98, 63 |
| Conread position: | 121-539 |
| Cow position: | chr2:3729561-3729978 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 169-538 |
| Cow position: | chr2:32654214-32654588 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 170-548 |
| Cow position: | chr2:176663-176286 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 159, 23 |
| Conread position: | 171-538 |
| Cow position: | chr2:1673772-1673411 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 171-538 |
| Cow position: | chr2:44936207-44935832 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 171-539 |
| Cow position: | chr2:51305997-51305660 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 172-344 |
| Cow position: | chr2:46945424-46945597 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 150 |
| Conread position: | 172-434 |
| Cow position: | chr2:14560043-14560305 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 199, 21 |
| Conread position: | 172-534 |
| Cow position: | chr2:22076666-22077023 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 217, 30 |
| Conread position: | 172-536 |
| Cow position: | chr2:47809895-47810258 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 172-538 |
| Cow position: | chr2:36032190-36031821 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 172-538 |
| Cow position: | chr2:44992409-44992044 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 16 |
| Conread position: | 173-541 |
| Cow position: | chr2:7900931-7901311 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 174-436 |
| Cow position: | chr2:28622198-28621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 174-538 |
| Cow position: | chr2:16288122-16288491 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 174-538 |
| Cow position: | chr2:78761367-78761723 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 257, 23 |
| Conread position: | 176-536 |
| Cow position: | chr2:40244752-40245082 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 212, 17 |
| Conread position: | 176-539 |
| Cow position: | chr2:78741026-78741379 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 177-538 |
| Cow position: | chr2:2363045-2363390 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 177-538 |
| Cow position: | chr2:38589065-38589421 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 160, 146 |
| Conread position: | 187-538 |
| Cow position: | chr2:32459123-32458774 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 28 |
| Conread position: | 188-534 |
| Cow position: | chr2:5486054-5485718 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 188-538 |
| Cow position: | chr2:6877392-6877731 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 98, 9 |
| Conread position: | 189-538 |
| Cow position: | chr2:41171613-41171933 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 145 |
| Conread position: | 189-539 |
| Cow position: | chr2:202769-202407 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 193-538 |
| Cow position: | chr2:49603624-49603967 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 201, 20 |
| Conread position: | 193-544 |
| Cow position: | chr2:85069344-85068994 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 16 |
| Conread position: | 194-538 |
| Cow position: | chr2:2102547-2102217 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 194-538 |
| Cow position: | chr2:80515989-80516306 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 195-383 |
| Cow position: | chr2:6773347-6773159 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 195-383 |
| Cow position: | chr2:82165055-82165238 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 195-519 |
| Cow position: | chr2:75250689-75250989 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 195-538 |
| Cow position: | chr2:5481725-5481398 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr2:10844429-10844100 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 213-538 |
| Cow position: | chr2:41148975-41149296 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 172 |
| Conread position: | 213-538 |
| Cow position: | chr2:47604887-47604558 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 125, 49 |
| Conread position: | 216-538 |
| Cow position: | chr2:50984304-50983991 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 137, 18 |
| Conread position: | 217-538 |
| Cow position: | chr2:56438797-56438483 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 226, 93 |
| Conread position: | 219-538 |
| Cow position: | chr2:6879098-6879416 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 226-531 |
| Cow position: | chr2:976337-976042 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-531 |
| Cow position: | chr2:8117168-8117469 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 226-534 |
| Cow position: | chr2:52061601-52061902 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 127, 176 |
| Conread position: | 226-534 |
| Cow position: | chr2:65939511-65939215 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 128, 90 |
| Conread position: | 226-535 |
| Cow position: | chr2:45214328-45214023 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 205, 119 |
| Conread position: | 226-536 |
| Cow position: | chr2:6959670-6959979 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 120 |
| Conread position: | 226-536 |
| Cow position: | chr2:10187294-10186989 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 226-536 |
| Cow position: | chr2:10269749-10269423 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 226-536 |
| Cow position: | chr2:13046750-13046444 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 127, 150 |
| Conread position: | 226-536 |
| Cow position: | chr2:16899173-16899479 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 124, 150 |
| Conread position: | 226-536 |
| Cow position: | chr2:19009162-19009468 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 178 |
| Conread position: | 226-536 |
| Cow position: | chr2:24921274-24921580 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr2:28651297-28650991 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 127, 179 |
| Conread position: | 226-536 |
| Cow position: | chr2:28791987-28792288 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 226-536 |
| Cow position: | chr2:36979030-36979336 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-536 |
| Cow position: | chr2:53328680-53328985 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 127, 22 |
| Conread position: | 228-536 |
| Cow position: | chr2:12225211-12224915 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 125, 138 |
| Conread position: | 233-531 |
| Cow position: | chr2:34567760-34567453 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 155, 56 |
| Conread position: | 248-536 |
| Cow position: | chr2:10733884-10733595 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 254-417 |
| Cow position: | chr2:15578992-15578833 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 107 |
| Conread position: | 256-538 |
| Cow position: | chr2:74392412-74392129 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 136, 25 |
| Conread position: | 258-538 |
| Cow position: | chr2:2357502-2357220 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 136, 96 |
| Conread position: | 268-538 |
| Cow position: | chr2:85356784-85356531 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 402-536 |
| Cow position: | chr2:44166245-44166112 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 402-538 |
| Cow position: | chr2:52152754-52152616 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 416-543 |
| Cow position: | chr2:422177-422308 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.