Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 3-189 |
| Cow position: | chr21:28873929-28874113 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 7-538 |
| Cow position: | chr21:358356-358886 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 11-372 |
| Cow position: | chr21:18820763-18820397 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 81-534 |
| Cow position: | chr21:33754711-33755158 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 81-538 |
| Cow position: | chr21:35089103-35089572 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 83-363 |
| Cow position: | chr21:26617212-26616936 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 83-382 |
| Cow position: | chr21:36713833-36714132 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 169-521 |
| Cow position: | chr21:2542372-2542020 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 24 |
| Conread position: | 169-536 |
| Cow position: | chr21:1190547-1190909 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 170-536 |
| Cow position: | chr21:40272307-40271946 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 171-369 |
| Cow position: | chr21:23809275-23809473 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 176-538 |
| Cow position: | chr21:4076384-4076716 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 212, 17 |
| Conread position: | 176-538 |
| Cow position: | chr21:35595903-35596250 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 20 |
| Conread position: | 176-538 |
| Cow position: | chr21:47939003-47939348 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 212, 17 |
| Conread position: | 177-344 |
| Cow position: | chr21:3798557-3798397 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 177-369 |
| Cow position: | chr21:46908571-46908384 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 177-535 |
| Cow position: | chr21:20745214-20744872 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 182-362 |
| Cow position: | chr21:25286132-25286306 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 188-537 |
| Cow position: | chr21:2769934-2769585 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 21 |
| Conread position: | 189-539 |
| Cow position: | chr21:2415754-2416117 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 189-539 |
| Cow position: | chr21:4590445-4590089 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 194-538 |
| Cow position: | chr21:34259672-34259343 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 165, 19 |
| Conread position: | 195-359 |
| Cow position: | chr21:13124439-13124276 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 195-383 |
| Cow position: | chr21:34292343-34292526 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr21:2717126-2716800 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 203-538 |
| Cow position: | chr21:29086048-29086361 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 220-539 |
| Cow position: | chr21:4183079-4183415 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 223-536 |
| Cow position: | chr21:48115665-48115975 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 129, 147 |
| Conread position: | 226-534 |
| Cow position: | chr21:2884175-2883869 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 162, 96 |
| Conread position: | 226-536 |
| Cow position: | chr21:3778335-3778635 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 174, 120 |
| Conread position: | 226-536 |
| Cow position: | chr21:10566240-10566546 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr21:10849641-10849947 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 127, 179 |
| Conread position: | 226-536 |
| Cow position: | chr21:33250956-33251259 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 229-538 |
| Cow position: | chr21:41952742-41953052 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 233-538 |
| Cow position: | chr21:2501504-2501807 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 126, 112 |
| Conread position: | 240-537 |
| Cow position: | chr21:31560072-31559779 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 113, 129 |
| Conread position: | 328-537 |
| Cow position: | chr21:5016376-5016162 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 349-531 |
| Cow position: | chr21:2789298-2789119 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 396-531 |
| Cow position: | chr21:4222970-4222834 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 431-543 |
| Cow position: | chr21:34292781-34292893 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.