Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 77-455 |
| Cow position: | chr29:45464537-45464147 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 92 |
| Conread position: | 83-537 |
| Cow position: | chr29:30810806-30811257 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 236 |
| Conread position: | 94-535 |
| Cow position: | chr29:32890476-32890912 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 96-411 |
| Cow position: | chr29:1714380-1714701 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 153 |
| Conread position: | 105-477 |
| Cow position: | chr29:32640073-32640428 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 115-536 |
| Cow position: | chr29:39080423-39080001 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 137-538 |
| Cow position: | chr29:804016-803626 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 138-541 |
| Cow position: | chr29:103882-104296 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 171-538 |
| Cow position: | chr29:2751039-2750676 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 172-517 |
| Cow position: | chr29:21245918-21246254 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 172-536 |
| Cow position: | chr29:16021874-16022250 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 176-538 |
| Cow position: | chr29:21432002-21431634 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 177-445 |
| Cow position: | chr29:10848744-10848474 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 177-538 |
| Cow position: | chr29:16769507-16769843 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 177-538 |
| Cow position: | chr29:27041395-27041053 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 180-307 |
| Cow position: | chr29:6874507-6874380 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 190-539 |
| Cow position: | chr29:34752308-34751978 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 24 |
| Conread position: | 193-536 |
| Cow position: | chr29:19652475-19652813 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 160, 7 |
| Conread position: | 195-538 |
| Cow position: | chr29:11048660-11048989 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 19 |
| Conread position: | 202-538 |
| Cow position: | chr29:21543980-21543665 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 217-539 |
| Cow position: | chr29:15950783-15950468 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 220-519 |
| Cow position: | chr29:42649751-42650051 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 136, 151 |
| Conread position: | 220-519 |
| Cow position: | chr29:42801611-42801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 212, 135 |
| Conread position: | 220-535 |
| Cow position: | chr29:45459117-45459423 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 198, 126 |
| Conread position: | 220-536 |
| Cow position: | chr29:20250552-20250864 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 146 |
| Conread position: | 220-536 |
| Cow position: | chr29:43321944-43322264 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 174, 90 |
| Conread position: | 220-536 |
| Cow position: | chr29:45587905-45587593 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 139, 192 |
| Conread position: | 226-535 |
| Cow position: | chr29:23975232-23975536 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-536 |
| Cow position: | chr29:2099245-2099548 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 128, 143 |
| Conread position: | 226-536 |
| Cow position: | chr29:6267094-6266787 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 127, 188 |
| Conread position: | 226-536 |
| Cow position: | chr29:7431817-7431511 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr29:10824557-10824252 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr29:25933145-25932839 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-536 |
| Cow position: | chr29:26165419-26165117 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 127, 185 |
| Conread position: | 226-536 |
| Cow position: | chr29:32539210-32539516 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 120 |
| Conread position: | 226-536 |
| Cow position: | chr29:38226393-38226699 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 179 |
| Conread position: | 226-536 |
| Cow position: | chr29:40503580-40503274 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 134, 187 |
| Conread position: | 234-538 |
| Cow position: | chr29:8663681-8663984 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 90 |
| Conread position: | 238-536 |
| Cow position: | chr29:19623832-19623539 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 253-536 |
| Cow position: | chr29:49050-48771 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 98, 116 |
| Conread position: | 296-536 |
| Cow position: | chr29:2841896-2841660 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 393-543 |
| Cow position: | chr29:9644165-9644009 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.