Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 3-538 |
| Cow position: | chr3:64359087-64358539 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 7-401 |
| Cow position: | chr3:27906180-27905780 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 37 |
| Conread position: | 12-548 |
| Cow position: | chr3:3979496-3980023 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 43-428 |
| Cow position: | chr3:57500386-57500001 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 130 |
| Conread position: | 59-545 |
| Cow position: | chr3:14634936-14634451 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 138, 151 |
| Conread position: | 70-369 |
| Cow position: | chr3:50011566-50011871 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 146 |
| Conread position: | 77-405 |
| Cow position: | chr3:48329577-48329907 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 96, 140 |
| Conread position: | 79-536 |
| Cow position: | chr3:15177482-15177948 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 5 |
| Conread position: | 83-362 |
| Cow position: | chr3:44256986-44256718 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 83-534 |
| Cow position: | chr3:32843265-32842803 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 83-535 |
| Cow position: | chr3:18357704-18357254 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 83-536 |
| Cow position: | chr3:14755332-14754867 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 137 |
| Conread position: | 83-537 |
| Cow position: | chr3:30928854-30929303 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 93, 180 |
| Conread position: | 83-538 |
| Cow position: | chr3:80870903-80871360 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 242 |
| Conread position: | 83-539 |
| Cow position: | chr3:36099546-36099081 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 288 |
| Conread position: | 88-448 |
| Cow position: | chr3:54865541-54865176 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 88-534 |
| Cow position: | chr3:52861046-52861493 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 310 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 86, 244 |
| Conread position: | 89-540 |
| Cow position: | chr3:83700958-83700511 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 69, 132 |
| Conread position: | 114-434 |
| Cow position: | chr3:26948523-26948856 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 124-538 |
| Cow position: | chr3:19692879-19692453 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 167-536 |
| Cow position: | chr3:42431480-42431855 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 169-538 |
| Cow position: | chr3:39325961-39326316 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 24 |
| Conread position: | 170-536 |
| Cow position: | chr3:34031640-34031274 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 164 |
| Conread position: | 171-538 |
| Cow position: | chr3:17950927-17951293 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 171-538 |
| Cow position: | chr3:42580674-42580340 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 171-538 |
| Cow position: | chr3:52865492-52865120 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 172-536 |
| Cow position: | chr3:59860628-59860988 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 115, 37 |
| Conread position: | 172-538 |
| Cow position: | chr3:3053888-3054237 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 14 |
| Conread position: | 173-528 |
| Cow position: | chr3:2909817-2909464 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 173-537 |
| Cow position: | chr3:24592344-24591986 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 176-538 |
| Cow position: | chr3:6684727-6685077 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 176-538 |
| Cow position: | chr3:55230414-55230083 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 212, 17 |
| Conread position: | 177-364 |
| Cow position: | chr3:471615-471800 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 175, 19 |
| Conread position: | 177-427 |
| Cow position: | chr3:44255690-44255445 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 211, 25 |
| Conread position: | 189-538 |
| Cow position: | chr3:19801700-19802049 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 189-538 |
| Cow position: | chr3:49677029-49677387 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 189-538 |
| Cow position: | chr3:63005880-63005517 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 189-539 |
| Cow position: | chr3:58208802-58208464 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 245, 47 |
| Conread position: | 193-533 |
| Cow position: | chr3:34094106-34093770 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 192, 16 |
| Conread position: | 193-535 |
| Cow position: | chr3:56650970-56650643 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 193-538 |
| Cow position: | chr3:34396746-34396423 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 192, 20 |
| Conread position: | 194-508 |
| Cow position: | chr3:2653412-2653716 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 194-534 |
| Cow position: | chr3:53515020-53515354 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 159, 8 |
| Conread position: | 194-534 |
| Cow position: | chr3:57485436-57485101 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 159, 15 |
| Conread position: | 195-344 |
| Cow position: | chr3:31898654-31898509 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-533 |
| Cow position: | chr3:2633227-2633547 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-537 |
| Cow position: | chr3:31354943-31354629 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 195-538 |
| Cow position: | chr3:207852-207535 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 195-538 |
| Cow position: | chr3:5047876-5047559 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr3:9716112-9716436 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-538 |
| Cow position: | chr3:66118963-66119277 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 195-539 |
| Cow position: | chr3:5830320-5829996 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 325, 18 |
| Conread position: | 196-538 |
| Cow position: | chr3:66637347-66637671 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 208-516 |
| Cow position: | chr3:83234789-83234484 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 184, 46 |
| Conread position: | 218-538 |
| Cow position: | chr3:21946095-21945781 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 144, 161 |
| Conread position: | 219-536 |
| Cow position: | chr3:5996560-5996244 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 134, 150 |
| Conread position: | 220-536 |
| Cow position: | chr3:43040375-43040069 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 216, 42 |
| Conread position: | 226-496 |
| Cow position: | chr3:5954851-5954588 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-535 |
| Cow position: | chr3:56341121-56340798 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 226-535 |
| Cow position: | chr3:69932718-69933019 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 154, 120 |
| Conread position: | 226-535 |
| Cow position: | chr3:75041829-75041523 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 187 |
| Conread position: | 226-535 |
| Cow position: | chr3:78028094-78027789 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 127, 179 |
| Conread position: | 226-536 |
| Cow position: | chr3:2711638-2711335 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 127, 24 |
| Conread position: | 226-536 |
| Cow position: | chr3:18810821-18811126 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 226-536 |
| Cow position: | chr3:21183358-21183059 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 168, 38 |
| Conread position: | 226-536 |
| Cow position: | chr3:23292087-23291782 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 127, 150 |
| Conread position: | 226-536 |
| Cow position: | chr3:36882592-36882289 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 127, 95 |
| Conread position: | 226-536 |
| Cow position: | chr3:38865724-38866031 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 144 |
| Conread position: | 226-536 |
| Cow position: | chr3:47273647-47273343 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 226-536 |
| Cow position: | chr3:48061505-48061199 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr3:64018045-64017741 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 127, 185 |
| Conread position: | 226-536 |
| Cow position: | chr3:72629389-72629694 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 233-538 |
| Cow position: | chr3:18464434-18464125 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 240-535 |
| Cow position: | chr3:4739555-4739283 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 268-545 |
| Cow position: | chr3:50128516-50128242 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 271-536 |
| Cow position: | chr3:49545806-49545550 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 144, 68 |
| Conread position: | 365-538 |
| Cow position: | chr3:48231524-48231349 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 431-538 |
| Cow position: | chr3:13513683-13513575 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.