Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 4-260 |
| Cow position: | chr5:6518839-6519106 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 34, 169 |
| Conread position: | 27-535 |
| Cow position: | chr5:46631394-46630894 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 66-252 |
| Cow position: | chr5:28044858-28044673 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 74-538 |
| Cow position: | chr5:23688426-23687947 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 99 |
| Conread position: | 77-435 |
| Cow position: | chr5:26090791-26090437 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 77-538 |
| Cow position: | chr5:58746950-58747415 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 78-539 |
| Cow position: | chr5:25001829-25001392 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 313 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 310, 74 |
| Conread position: | 83-539 |
| Cow position: | chr5:23227330-23227785 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 306 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 83-548 |
| Cow position: | chr5:24151136-24151616 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 92-540 |
| Cow position: | chr5:27488108-27488556 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 85 |
| Conread position: | 94-533 |
| Cow position: | chr5:58090723-58090307 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 94-535 |
| Cow position: | chr5:27000278-27000722 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 277 |
| Conread position: | 102-537 |
| Cow position: | chr5:27060990-27060553 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 68 |
| Conread position: | 125-540 |
| Cow position: | chr5:34167175-34167601 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 119 |
| Conread position: | 133-540 |
| Cow position: | chr5:26070713-26070326 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 170-549 |
| Cow position: | chr5:10777115-10776718 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 176, 23 |
| Conread position: | 171-383 |
| Cow position: | chr5:45699194-45699403 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 172-536 |
| Cow position: | chr5:7273031-7273388 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 172-538 |
| Cow position: | chr5:4384390-4384753 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 213, 30 |
| Conread position: | 172-538 |
| Cow position: | chr5:32945047-32945404 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 201, 21 |
| Conread position: | 173-531 |
| Cow position: | chr5:24097819-24098164 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 6 |
| Conread position: | 175-512 |
| Cow position: | chr5:46658868-46659208 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 18 |
| Conread position: | 175-539 |
| Cow position: | chr5:61274002-61273636 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 18 |
| Conread position: | 176-538 |
| Cow position: | chr5:23716781-23716421 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 17 |
| Conread position: | 176-538 |
| Cow position: | chr5:41963762-41963408 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 17 |
| Conread position: | 178-538 |
| Cow position: | chr5:49594307-49593935 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 189-538 |
| Cow position: | chr5:28006409-28006754 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 204, 157 |
| Conread position: | 189-538 |
| Cow position: | chr5:41530395-41530046 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 189-545 |
| Cow position: | chr5:6159013-6158663 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 177, 137 |
| Conread position: | 193-439 |
| Cow position: | chr5:49123643-49123391 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 194-502 |
| Cow position: | chr5:27569391-27569672 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 194, 19 |
| Conread position: | 194-502 |
| Cow position: | chr5:27652766-27652473 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 305, 19 |
| Conread position: | 194-536 |
| Cow position: | chr5:49181492-49181808 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 144, 19 |
| Conread position: | 194-545 |
| Cow position: | chr5:52804542-52804865 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 200, 19 |
| Conread position: | 195-538 |
| Cow position: | chr5:26769008-26769337 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 195-538 |
| Cow position: | chr5:28030701-28031017 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 190, 18 |
| Conread position: | 195-546 |
| Cow position: | chr5:29008572-29008894 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 343, 20 |
| Conread position: | 213-513 |
| Cow position: | chr5:29456825-29457121 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 213-539 |
| Cow position: | chr5:12682300-12681976 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 161 |
| Conread position: | 216-536 |
| Cow position: | chr5:3785017-3785333 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 212, 129 |
| Conread position: | 216-536 |
| Cow position: | chr5:54793412-54793096 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 217-538 |
| Cow position: | chr5:32674534-32674204 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 192 |
| Conread position: | 220-536 |
| Cow position: | chr5:1342585-1342274 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 220-536 |
| Cow position: | chr5:48809499-48809192 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 119, 132 |
| Conread position: | 225-536 |
| Cow position: | chr5:55627222-55627526 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 128, 22 |
| Conread position: | 226-531 |
| Cow position: | chr5:416504-416202 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr5:2913667-2913972 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 149 |
| Conread position: | 226-536 |
| Cow position: | chr5:10918020-10918319 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr5:34695802-34696106 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 127, 176 |
| Conread position: | 226-536 |
| Cow position: | chr5:46739385-46739063 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 119, 96 |
| Conread position: | 226-536 |
| Cow position: | chr5:49120061-49119756 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 176 |
| Conread position: | 226-536 |
| Cow position: | chr5:57483325-57483025 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 226-536 |
| Cow position: | chr5:59281978-59282284 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 127, 144 |
| Conread position: | 226-539 |
| Cow position: | chr5:3505024-3504715 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 227-536 |
| Cow position: | chr5:2430914-2430610 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 227-536 |
| Cow position: | chr5:4068211-4068512 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 247-538 |
| Cow position: | chr5:34202200-34202471 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 252-538 |
| Cow position: | chr5:46006191-46005907 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 266-541 |
| Cow position: | chr5:30088451-30088184 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 68, 56 |
| Conread position: | 275-538 |
| Cow position: | chr5:6519160-6519422 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 89 |
Show alignments to all cow chromosomes.