Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 12-310 |
| Cow position: | chr6:10639792-10640096 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 155 |
| Conread position: | 80-538 |
| Cow position: | chr6:7180458-7179999 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 278 |
| Conread position: | 83-538 |
| Cow position: | chr6:37477440-37477909 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 90 |
| Conread position: | 101-479 |
| Cow position: | chr6:4904827-4904444 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 119 |
| Conread position: | 121-526 |
| Cow position: | chr6:66194729-66194321 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 169-536 |
| Cow position: | chr6:24238350-24238711 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 179 |
| Conread position: | 169-538 |
| Cow position: | chr6:66231122-66231481 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 173, 24 |
| Conread position: | 172-536 |
| Cow position: | chr6:50498146-50497789 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 172-536 |
| Cow position: | chr6:55545027-55544663 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 172-538 |
| Cow position: | chr6:30478390-30478765 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 172-619 |
| Cow position: | chr6:66538638-66539074 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 259, 25 |
| Conread position: | 173-538 |
| Cow position: | chr6:13318377-13318021 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 176-538 |
| Cow position: | chr6:12093545-12093189 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 189-474 |
| Cow position: | chr6:10053962-10054239 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 189-538 |
| Cow position: | chr6:38231587-38231945 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 192-538 |
| Cow position: | chr6:28508961-28509300 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 193-532 |
| Cow position: | chr6:47958406-47958763 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 142, 10 |
| Conread position: | 193-538 |
| Cow position: | chr6:65900589-65900244 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 194-344 |
| Cow position: | chr6:13275913-13276064 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 194-344 |
| Cow position: | chr6:42926730-42926879 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 195-538 |
| Cow position: | chr6:19453270-19453594 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 208-537 |
| Cow position: | chr6:11278355-11278031 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 126 |
| Conread position: | 213-540 |
| Cow position: | chr6:62489372-62489041 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 182, 64 |
| Conread position: | 214-536 |
| Cow position: | chr6:5951891-5951573 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 201 |
| Conread position: | 220-542 |
| Cow position: | chr6:912983-913302 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 133, 149 |
| Conread position: | 221-536 |
| Cow position: | chr6:3890134-3889823 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 134, 100 |
| Conread position: | 226-402 |
| Cow position: | chr6:35421318-35421143 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 226-531 |
| Cow position: | chr6:64712912-64713207 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 226-531 |
| Cow position: | chr6:64714479-64714774 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 226-535 |
| Cow position: | chr6:39436996-39437306 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 168, 120 |
| Conread position: | 226-536 |
| Cow position: | chr6:52154-51853 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 127, 95 |
| Conread position: | 226-536 |
| Cow position: | chr6:2111595-2111293 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 192, 120 |
| Conread position: | 226-536 |
| Cow position: | chr6:3278592-3278287 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr6:3489034-3488728 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 120, 186 |
| Conread position: | 226-536 |
| Cow position: | chr6:8201090-8201396 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 127, 162 |
| Conread position: | 226-536 |
| Cow position: | chr6:15141812-15141511 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 196, 120 |
| Conread position: | 226-536 |
| Cow position: | chr6:15281185-15280879 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr6:20561742-20561445 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 141, 126 |
| Conread position: | 226-536 |
| Cow position: | chr6:27530637-27530335 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 140, 120 |
| Conread position: | 226-536 |
| Cow position: | chr6:28274350-28274652 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 226-536 |
| Cow position: | chr6:34893649-34893346 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 127, 193 |
| Conread position: | 226-536 |
| Cow position: | chr6:36525403-36525706 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-542 |
| Cow position: | chr6:40555252-40554944 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 206, 120 |
| Conread position: | 226-543 |
| Cow position: | chr6:65840946-65841261 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 144 |
| Conread position: | 228-519 |
| Cow position: | chr6:6477100-6476806 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 37 |
| Conread position: | 229-536 |
| Cow position: | chr6:65880221-65880530 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 184 |
| Conread position: | 233-534 |
| Cow position: | chr6:1823873-1823584 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 267-535 |
| Cow position: | chr6:47044025-47043769 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 86, 99 |
| Conread position: | 267-548 |
| Cow position: | chr6:52735794-52736083 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 122, 79 |
| Conread position: | 343-541 |
| Cow position: | chr6:10640264-10640466 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 78 |
Show alignments to all cow chromosomes.