Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 3-538 |
| Cow position: | chr8:45161964-45161416 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 7-539 |
| Cow position: | chr8:44692731-44693246 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 133 |
| Conread position: | 8-538 |
| Cow position: | chr8:53426735-53427275 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 15-180 |
| Cow position: | chr8:38608394-38608230 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 77-538 |
| Cow position: | chr8:13735127-13735596 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 77-538 |
| Cow position: | chr8:25542088-25542541 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 43 |
| Conread position: | 83-539 |
| Cow position: | chr8:42466887-42467344 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 131 |
| Conread position: | 157-530 |
| Cow position: | chr8:27924706-27925058 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 228, 19 |
| Conread position: | 170-493 |
| Cow position: | chr8:19229382-19229707 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 258, 23 |
| Conread position: | 170-536 |
| Cow position: | chr8:19050059-19050428 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 170-539 |
| Cow position: | chr8:11757287-11757666 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 171-536 |
| Cow position: | chr8:25777294-25776934 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 171-536 |
| Cow position: | chr8:50993375-50993733 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 172-536 |
| Cow position: | chr8:11800817-11801176 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 216, 21 |
| Conread position: | 172-537 |
| Cow position: | chr8:30491124-30490759 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 213, 30 |
| Conread position: | 172-538 |
| Cow position: | chr8:33429508-33429859 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 21 |
| Conread position: | 173-538 |
| Cow position: | chr8:42658872-42658517 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 173-540 |
| Cow position: | chr8:11055478-11055838 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 129, 32 |
| Conread position: | 175-352 |
| Cow position: | chr8:46945576-46945400 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 175-480 |
| Cow position: | chr8:38607940-38607637 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 176-458 |
| Cow position: | chr8:61036304-61036037 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 212, 17 |
| Conread position: | 176-536 |
| Cow position: | chr8:44077432-44077079 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 33 |
| Conread position: | 176-537 |
| Cow position: | chr8:47884598-47884969 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 179, 17 |
| Conread position: | 176-538 |
| Cow position: | chr8:9540916-9540545 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 176-538 |
| Cow position: | chr8:42162065-42161706 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 17 |
| Conread position: | 177-344 |
| Cow position: | chr8:23216372-23216536 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 177-516 |
| Cow position: | chr8:12664436-12664099 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 224, 23 |
| Conread position: | 177-537 |
| Cow position: | chr8:11760952-11761306 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 211, 16 |
| Conread position: | 177-538 |
| Cow position: | chr8:44121440-44121805 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 110, 22 |
| Conread position: | 189-538 |
| Cow position: | chr8:11970968-11970619 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 193-452 |
| Cow position: | chr8:11590248-11590498 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 143, 10 |
| Conread position: | 193-452 |
| Cow position: | chr8:23766742-23766490 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 195, 16 |
| Conread position: | 195-538 |
| Cow position: | chr8:27984207-27983856 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 195-538 |
| Cow position: | chr8:45317494-45317179 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 202-538 |
| Cow position: | chr8:45188697-45189015 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 206-545 |
| Cow position: | chr8:36636927-36636592 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 147, 163 |
| Conread position: | 213-538 |
| Cow position: | chr8:8317003-8316686 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 150, 130 |
| Conread position: | 213-538 |
| Cow position: | chr8:24421159-24420845 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 34 |
| Conread position: | 214-536 |
| Cow position: | chr8:33588000-33588319 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 214-536 |
| Cow position: | chr8:60059826-60060145 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 216-536 |
| Cow position: | chr8:49214053-49214370 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 88, 198 |
| Conread position: | 217-538 |
| Cow position: | chr8:8904874-8904563 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 52 |
| Conread position: | 225-532 |
| Cow position: | chr8:46633760-46633452 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 226-512 |
| Cow position: | chr8:14592774-14592496 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 120 |
| Conread position: | 226-517 |
| Cow position: | chr8:14929392-14929106 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 108 |
| Conread position: | 226-534 |
| Cow position: | chr8:3784217-3784520 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 139, 35 |
| Conread position: | 226-536 |
| Cow position: | chr8:3857377-3857071 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 67 |
| Conread position: | 226-536 |
| Cow position: | chr8:8402564-8402258 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 127, 187 |
| Conread position: | 226-536 |
| Cow position: | chr8:8909871-8910177 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 114 |
| Conread position: | 226-536 |
| Cow position: | chr8:19328591-19328896 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 226-536 |
| Cow position: | chr8:23770275-23770580 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr8:25522035-25522339 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 120, 143 |
| Conread position: | 226-536 |
| Cow position: | chr8:29441189-29440886 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 226-536 |
| Cow position: | chr8:32319912-32319606 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chr8:38087761-38088066 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 126, 144 |
| Conread position: | 226-536 |
| Cow position: | chr8:38390007-38390309 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 226-536 |
| Cow position: | chr8:44244936-44244634 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr8:45796107-45795802 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 226-536 |
| Cow position: | chr8:59263257-59262953 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 174, 120 |
| Conread position: | 226-539 |
| Cow position: | chr8:24916693-24916386 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 137, 120 |
| Conread position: | 226-545 |
| Cow position: | chr8:36638022-36637707 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 233-536 |
| Cow position: | chr8:2171755-2171438 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 233-536 |
| Cow position: | chr8:8230159-8229843 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 248-536 |
| Cow position: | chr8:61198458-61198174 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 116, 155 |
| Conread position: | 307-538 |
| Cow position: | chr8:5873348-5873582 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 116, 51 |
Show alignments to all cow chromosomes.