Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 60-350 |
| Cow position: | chr9:13219478-13219775 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 78-539 |
| Cow position: | chr9:64118000-64118440 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 81-538 |
| Cow position: | chr9:6756701-6757165 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 82-448 |
| Cow position: | chr9:10318649-10319017 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 83-345 |
| Cow position: | chr9:8167077-8166806 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 83-377 |
| Cow position: | chr9:23400781-23401082 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 83-538 |
| Cow position: | chr9:6111786-6111354 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 77, 54 |
| Conread position: | 83-538 |
| Cow position: | chr9:20310573-20310120 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 88-434 |
| Cow position: | chr9:34107716-34107367 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 88-484 |
| Cow position: | chr9:26237270-26237654 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 101-540 |
| Cow position: | chr9:2051636-2052058 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 288, 74 |
| Conread position: | 116-461 |
| Cow position: | chr9:26103420-26103062 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 169-536 |
| Cow position: | chr9:29629521-29629154 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 201 |
| Conread position: | 170-538 |
| Cow position: | chr9:1252745-1252372 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 197, 23 |
| Conread position: | 171-344 |
| Cow position: | chr9:3155309-3155478 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 6, 19 |
| Conread position: | 172-535 |
| Cow position: | chr9:4027854-4027491 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 172-539 |
| Cow position: | chr9:59443063-59443451 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 174-402 |
| Cow position: | chr9:3802753-3802976 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 175-536 |
| Cow position: | chr9:5003249-5003606 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 176-545 |
| Cow position: | chr9:31020048-31020408 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 177-538 |
| Cow position: | chr9:8969794-8969448 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 19 |
| Conread position: | 192-535 |
| Cow position: | chr9:4984034-4984372 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 17 |
| Conread position: | 193-538 |
| Cow position: | chr9:651825-651498 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 193-538 |
| Cow position: | chr9:52289885-52290235 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 16 |
| Conread position: | 194-536 |
| Cow position: | chr9:59483408-59483076 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 195-531 |
| Cow position: | chr9:54359863-54360195 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 18 |
| Conread position: | 196-383 |
| Cow position: | chr9:10314661-10314847 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 202-538 |
| Cow position: | chr9:34990932-34991244 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 186, 11 |
| Conread position: | 202-541 |
| Cow position: | chr9:15071798-15072113 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 183, 11 |
| Conread position: | 213-536 |
| Cow position: | chr9:27033983-27034301 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 214-536 |
| Cow position: | chr9:51183435-51183115 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 157 |
| Conread position: | 220-536 |
| Cow position: | chr9:37971927-37971614 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 110, 186 |
| Conread position: | 226-450 |
| Cow position: | chr9:22650211-22650442 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 226-517 |
| Cow position: | chr9:42308969-42309257 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 187 |
| Conread position: | 226-535 |
| Cow position: | chr9:9012397-9012700 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 226-535 |
| Cow position: | chr9:16175055-16175360 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 168, 76 |
| Conread position: | 226-536 |
| Cow position: | chr9:2199403-2199704 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 100 |
| Conread position: | 226-536 |
| Cow position: | chr9:3548883-3548577 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 127, 187 |
| Conread position: | 226-536 |
| Cow position: | chr9:6051750-6051447 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 226-536 |
| Cow position: | chr9:6831256-6830951 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 132, 192 |
| Conread position: | 226-536 |
| Cow position: | chr9:7001842-7002147 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 226-536 |
| Cow position: | chr9:10321114-10321415 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 156, 117 |
| Conread position: | 226-536 |
| Cow position: | chr9:10855486-10855793 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 226-536 |
| Cow position: | chr9:28020834-28021140 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 152 |
| Conread position: | 226-536 |
| Cow position: | chr9:30671658-30671963 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 185 |
| Conread position: | 226-536 |
| Cow position: | chr9:31806826-31807133 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 226-536 |
| Cow position: | chr9:37163518-37163215 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 125, 39 |
| Conread position: | 226-536 |
| Cow position: | chr9:42568160-42568466 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 139, 120 |
| Conread position: | 226-536 |
| Cow position: | chr9:59174870-59174564 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 187 |
| Conread position: | 228-536 |
| Cow position: | chr9:59535394-59535692 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 118 |
| Conread position: | 247-535 |
| Cow position: | chr9:418219-417939 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 128, 99 |
| Conread position: | 267-535 |
| Cow position: | chr9:1996584-1996328 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 99, 79 |
| Conread position: | 334-537 |
| Cow position: | chr9:2500915-2500701 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.