Cow genome map
| Conread name: | Emb1-C0005215_G03 |
| Conread position: | 83-535 |
| Cow position: | chrX:2142357-2142811 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 137 |
| Conread position: | 83-538 |
| Cow position: | chrX:18532013-18532506 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 174 |
| Conread position: | 83-539 |
| Cow position: | chrX:22131660-22131185 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 302 |
| Conread position: | 83-541 |
| Cow position: | chrX:30369936-30369469 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 179, 86 |
| Conread position: | 88-434 |
| Cow position: | chrX:17669359-17669013 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 133 |
| Conread position: | 89-538 |
| Cow position: | chrX:24376414-24376874 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 79 |
| Conread position: | 92-534 |
| Cow position: | chrX:28548957-28549400 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 171-344 |
| Cow position: | chrX:6910594-6910421 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 171-531 |
| Cow position: | chrX:16236460-16236816 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 171-536 |
| Cow position: | chrX:28553158-28553522 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 22 |
| Conread position: | 171-538 |
| Cow position: | chrX:29283870-29284236 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 172-518 |
| Cow position: | chrX:28651962-28651637 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 172-536 |
| Cow position: | chrX:2483497-2483141 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 172-536 |
| Cow position: | chrX:21828674-21829025 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 172-536 |
| Cow position: | chrX:26527116-26527474 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 181, 37 |
| Conread position: | 172-536 |
| Cow position: | chrX:38145200-38145559 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 173-535 |
| Cow position: | chrX:21271026-21270668 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 175-382 |
| Cow position: | chrX:31034839-31035043 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 175-536 |
| Cow position: | chrX:25186803-25187158 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 178, 38 |
| Conread position: | 175-538 |
| Cow position: | chrX:24139832-24139476 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 227, 18 |
| Conread position: | 175-543 |
| Cow position: | chrX:19185792-19185435 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 240, 40 |
| Conread position: | 176-383 |
| Cow position: | chrX:30144353-30144149 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 176-538 |
| Cow position: | chrX:25332239-25332582 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 351, 37 |
| Conread position: | 177-534 |
| Cow position: | chrX:9901466-9901100 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 176, 32 |
| Conread position: | 177-536 |
| Cow position: | chrX:21586163-21586535 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 177-537 |
| Cow position: | chrX:22894226-22893861 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 185-538 |
| Cow position: | chrX:19927465-19927815 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 189-352 |
| Cow position: | chrX:31372111-31372274 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 191-538 |
| Cow position: | chrX:21489363-21489736 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 110, 244 |
| Conread position: | 193-538 |
| Cow position: | chrX:22813553-22813903 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 142, 45 |
| Conread position: | 194-346 |
| Cow position: | chrX:28604906-28604755 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 194-536 |
| Cow position: | chrX:30232942-30232605 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 159, 63 |
| Conread position: | 195-528 |
| Cow position: | chrX:40057886-40057571 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:11534656-11534987 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:13007456-13007131 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 138, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:21602063-21602389 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 308, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:21633393-21633081 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 234, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:24122741-24122417 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 207, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:30046943-30046614 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 190, 18 |
| Conread position: | 195-538 |
| Cow position: | chrX:35017003-35017328 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 18 |
| Conread position: | 202-538 |
| Cow position: | chrX:21290306-21289984 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 11 |
| Conread position: | 208-429 |
| Cow position: | chrX:6284048-6283830 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 213-536 |
| Cow position: | chrX:26768017-26767694 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 152, 133 |
| Conread position: | 213-537 |
| Cow position: | chrX:30990759-30990454 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 213-538 |
| Cow position: | chrX:26432150-26432475 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 213-541 |
| Cow position: | chrX:29794928-29794602 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 125, 114 |
| Conread position: | 225-536 |
| Cow position: | chrX:26759398-26759092 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 175, 32 |
| Conread position: | 225-539 |
| Cow position: | chrX:35019849-35020158 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 163, 40 |
| Conread position: | 226-508 |
| Cow position: | chrX:318281-318558 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 127, 96 |
| Conread position: | 226-536 |
| Cow position: | chrX:969970-970273 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 226-536 |
| Cow position: | chrX:1546127-1546433 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 226-536 |
| Cow position: | chrX:13413929-13413617 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 67 |
| Conread position: | 226-536 |
| Cow position: | chrX:15128047-15127744 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 226-536 |
| Cow position: | chrX:15598123-15598428 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 226-536 |
| Cow position: | chrX:16698492-16698800 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 226-536 |
| Cow position: | chrX:23392407-23392103 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-536 |
| Cow position: | chrX:23456375-23456072 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 226-536 |
| Cow position: | chrX:29854371-29854065 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 140, 119 |
| Conread position: | 226-536 |
| Cow position: | chrX:30055851-30056171 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 126, 120 |
| Conread position: | 226-536 |
| Cow position: | chrX:32466443-32466753 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 187 |
| Conread position: | 226-536 |
| Cow position: | chrX:41151420-41151726 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 226-539 |
| Cow position: | chrX:32095758-32095450 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 192, 120 |
| Conread position: | 226-543 |
| Cow position: | chrX:23276312-23276625 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 120 |
| Conread position: | 228-340 |
| Cow position: | chrX:12974469-12974357 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-536 |
| Cow position: | chrX:18955317-18955016 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 6 |
| Conread position: | 233-536 |
| Cow position: | chrX:16017935-16017624 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 146, 97 |
| Conread position: | 234-530 |
| Cow position: | chrX:29883047-29882753 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 251-538 |
| Cow position: | chrX:11669217-11668935 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 137, 177 |
| Conread position: | 268-545 |
| Cow position: | chrX:20699031-20698753 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 164, 91 |
| Conread position: | 324-538 |
| Cow position: | chrX:22583644-22583419 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 395-539 |
| Cow position: | chrX:4795282-4795426 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 431-539 |
| Cow position: | chrX:39717192-39717300 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.