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Cow genome map

           
Conread name:
           
Emb1-C0005215_L04
        

               
Conread position:
               
1-146
               

               
Cow position:
               
chr24:25424812-25424956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr24:28600859-28600715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr24:2730821-2730662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr24:18324365-18324559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr24:3631266-3631447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
168, 43
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr24:18405558-18405377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr24:27267384-27267577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr24:35073841-35074036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr24:27809931-27810136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
64, 201
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr24:40055973-40055777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 87
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr24:5435298-5435090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr24:37246469-37246256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr24:6900573-6900790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr24:591659-591875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr24:27270543-27270749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr24:6340766-6340978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
115, 65
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr24:39219098-39218865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 202
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr24:24137102-24136882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr24:35794991-35794756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr24:33569687-33569463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
156, 48
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr24:35405822-35405580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
48, 203
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr24:18266423-18266162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
61, 244
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr24:36555080-36554822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr24:20024356-20024650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 194
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr24:34564875-34565163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr24:35795533-35795213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 196
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr24:30545107-30544796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
122, 68
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr24:19472-19123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 139
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr24:17159495-17159821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 205
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr24:20741071-20741397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
165, 68
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr24:34532872-34533204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 170
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr24:24250481-24250808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
170, 61
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr24:29679562-29679227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr24:32205045-32204709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr24:25111951-25112284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr24:29673268-29673608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 317
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr24:32370161-32369828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
161, 65
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr24:43364112-43364445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 67
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr24:18771434-18771094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
168, 8
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr24:16268355-16268035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
268, 52
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr24:41068017-41068354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
54, 165
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr24:6450263-6450587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
168, 62
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr24:18331485-18331825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr24:18970743-18970399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
167, 46
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr24:31159378-31159721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
168, 56
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr24:39440808-39440443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 172
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr24:14648586-14648237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
249, 63
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr24:32054421-32054790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
168, 81
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr24:20874425-20874818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr24:9222627-9222225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
61, 157
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr24:17294438-17294040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr24:44041260-44040852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 63
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr24:41755612-41756010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr24:36174034-36173618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 91
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr24:9070686-9070277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr24:27096434-27096855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr24:44987623-44987208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr24:1269553-1269948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 68
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr24:17104817-17104401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 61
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr24:37650419-37650846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 110
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr24:7913747-7914181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 191
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr24:30484195-30483772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 65
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr24:38347429-38347848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr24:39483222-39483636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:3493642-3494055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 11
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:11886906-11887327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:15246886-15246484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 111
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:15861852-15861416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:17943416-17943003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 82
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:18485251-18484817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:24491262-24490852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 121
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:27039787-27040223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:27608349-27607937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 110
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:27844771-27844359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 99
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:27874353-27874747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
114, 68
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:27906183-27906612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 138
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:28690449-28690860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
148, 56
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:33098739-33098298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:34742498-34742923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:34761642-34762070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 196
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr24:41980916-41980486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr24:17860502-17860086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 65
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr24:25885409-25884970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr24:16625751-16625534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr24:43635184-43635426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
2-315
               

               
Cow position:
               
chr24:43432551-43432854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
168, 45
               

               
Conread position:
               
2-330
               

               
Cow position:
               
chr24:23616444-23616776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
117, 84
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr24:27290625-27290958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr24:17955698-17955351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 202
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr24:2108502-2108129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr24:5754591-5754962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
167, 45
               

               
Conread position:
               
2-413
               

               
Cow position:
               
chr24:31816335-31816738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 99
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr24:43028576-43028164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr24:23556581-23556170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr24:28721638-28722047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr24:18374524-18374935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 113
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr24:30314286-30313858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 315
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr24:19466183-19465737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr24:25320739-25321157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 171
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr24:27149147-27149554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 104
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr24:11005412-11005847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
60, 201
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr24:33372300-33372720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
65, 130
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr24:35675293-35675705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr24:43370998-43371417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 88
               

               
Conread position:
               
2-426
               

               
Cow position:
               
chr24:18741821-18741387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 195
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chr24:21522850-21523011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr24:18734604-18734435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr24:38375035-38375201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
52, 109
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr24:20970041-20969862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr24:14279639-14279836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 185
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr24:21264760-21264564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr24:5151985-5152192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr24:39493048-39493267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
165, 69
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr24:17363898-17363669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr24:7001317-7001082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
66, 112
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr24:17567141-17567373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr24:42007496-42007728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
166, 66
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr24:14729159-14729399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
159, 61
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr24:25091211-25090928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 150
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr24:41985727-41986048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr24:7377345-7377023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
198, 80
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr24:29063895-29063578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr24:20225488-20225823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
55, 191
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr24:33230415-33230761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
21, 207
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr24:35150280-35150625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chr24:18390538-18390193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 192
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr24:27726253-27725878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
167, 54
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr24:20942920-20943297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr24:42345258-42344857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr24:30229219-30229635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr24:20587917-20588345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr24:28553794-28553401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr24:28496838-28496409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr24:31811935-31812359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 112
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr24:40300906-40301334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr24:33944158-33944584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr24:27748401-27748721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
167, 76
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr24:2096137-2095799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
167, 107
               

               
Conread position:
               
4-421
               

               
Cow position:
               
chr24:29596064-29595629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
4-422
               

               
Cow position:
               
chr24:19535497-19535080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
4-424
               

               
Cow position:
               
chr24:16994645-16995052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 62
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr24:2675082-2675419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
164, 77
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr24:10498963-10499392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr24:42825745-42825341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
57, 110
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr24:11839932-11840358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 199
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr24:11045798-11045385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
12-314
               

               
Cow position:
               
chr24:201875-201574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
72, 100
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr24:39159784-39159429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
12-424
               

               
Cow position:
               
chr24:26929189-26928767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 71
               

               
Conread position:
               
12-424
               

               
Cow position:
               
chr24:32609398-32609823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 325
               

               
Conread position:
               
12-424
               

               
Cow position:
               
chr24:34272562-34272993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
13-227
               

               
Cow position:
               
chr24:40849919-40850137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
108, 190
               

               
Conread position:
               
13-237
               

               
Cow position:
               
chr24:8814234-8814018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
13-424
               

               
Cow position:
               
chr24:10671146-10671571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 200
               

               
Conread position:
               
13-426
               

               
Cow position:
               
chr24:39850118-39849716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
158, 49
               

               
Conread position:
               
14-309
               

               
Cow position:
               
chr24:33222178-33221881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
14-424
               

               
Cow position:
               
chr24:17285236-17284809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
16-227
               

               
Cow position:
               
chr24:18695385-18695594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
153, 70
               

               
Conread position:
               
16-422
               

               
Cow position:
               
chr24:18343812-18344238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
16-424
               

               
Cow position:
               
chr24:25194030-25194440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr24:31382673-31382892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
18-169
               

               
Cow position:
               
chr24:3627055-3627210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
18-170
               

               
Cow position:
               
chr24:27781720-27781880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
18-424
               

               
Cow position:
               
chr24:30235635-30236046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
19-318
               

               
Cow position:
               
chr24:38684337-38684035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 161
               

               
Conread position:
               
21-336
               

               
Cow position:
               
chr24:20250135-20249811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 172
               

               
Conread position:
               
22-408
               

               
Cow position:
               
chr24:27299941-27300319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
23-366
               

               
Cow position:
               
chr24:28327312-28326967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
146, 61
               

               
Conread position:
               
23-424
               

               
Cow position:
               
chr24:34396402-34396016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
23-424
               

               
Cow position:
               
chr24:41001027-41001440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 166
               

               
Conread position:
               
25-318
               

               
Cow position:
               
chr24:9590244-9589943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
25-355
               

               
Cow position:
               
chr24:24457474-24457147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr24:28332511-28332315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 186
               

               
Conread position:
               
26-216
               

               
Cow position:
               
chr24:21918444-21918257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 47
               

               
Conread position:
               
26-230
               

               
Cow position:
               
chr24:10841442-10841229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr24:22263307-22263595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr24:19815306-19815006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 164
               

               
Conread position:
               
26-424
               

               
Cow position:
               
chr24:22689812-22689399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
44, 172
               

               
Conread position:
               
27-409
               

               
Cow position:
               
chr24:22224952-22225350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 166
               

               
Conread position:
               
30-380
               

               
Cow position:
               
chr24:33465823-33465492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
30-406
               

               
Cow position:
               
chr24:6102600-6102983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
31-318
               

               
Cow position:
               
chr24:37695028-37694745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
33-338
               

               
Cow position:
               
chr24:6141183-6140864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 134
               

               
Conread position:
               
33-424
               

               
Cow position:
               
chr24:16509753-16510145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
34-152
               

               
Cow position:
               
chr24:33379937-33380056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
34-424
               

               
Cow position:
               
chr24:13626064-13626460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
35-254
               

               
Cow position:
               
chr24:250794-250578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
35-257
               

               
Cow position:
               
chr24:39833733-39833510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
35-318
               

               
Cow position:
               
chr24:34579183-34578910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 134
               

               
Conread position:
               
35-422
               

               
Cow position:
               
chr24:22079239-22079635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 168
               

               
Conread position:
               
37-355
               

               
Cow position:
               
chr24:15373194-15373509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
37-397
               

               
Cow position:
               
chr24:16645537-16645171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
39-227
               

               
Cow position:
               
chr24:5911-5725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
40-359
               

               
Cow position:
               
chr24:34008793-34008465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
40-424
               

               
Cow position:
               
chr24:20801556-20801171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
41-337
               

               
Cow position:
               
chr24:28253495-28253805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 68
               

               
Conread position:
               
44-422
               

               
Cow position:
               
chr24:352813-352432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
45-313
               

               
Cow position:
               
chr24:15707650-15707383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
71, 151
               

               
Conread position:
               
45-425
               

               
Cow position:
               
chr24:2111613-2111214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
46-231
               

               
Cow position:
               
chr24:885889-885709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
48-155
               

               
Cow position:
               
chr24:6151529-6151639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr24:29708007-29707812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
51-338
               

               
Cow position:
               
chr24:32070767-32071048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
52-422
               

               
Cow position:
               
chr24:39143409-39143784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
52-424
               

               
Cow position:
               
chr24:6132072-6131714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
53-228
               

               
Cow position:
               
chr24:29360194-29360020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 27
               

               
Conread position:
               
53-422
               

               
Cow position:
               
chr24:25756485-25756126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
55-428
               

               
Cow position:
               
chr24:24155702-24155331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
63, 112
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr24:14171889-14171568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
103, 257
               

               
Conread position:
               
57-424
               

               
Cow position:
               
chr24:5633228-5632854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
114, 132
               

               
Conread position:
               
58-412
               

               
Cow position:
               
chr24:22647536-22647173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
60-187
               

               
Cow position:
               
chr24:18355030-18355159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
62-241
               

               
Cow position:
               
chr24:30226750-30226929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 143
               

               
Conread position:
               
62-387
               

               
Cow position:
               
chr24:26554791-26554457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
62-424
               

               
Cow position:
               
chr24:21606851-21606502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
274, 49
               

               
Conread position:
               
65-414
               

               
Cow position:
               
chr24:37024836-37025181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
65-424
               

               
Cow position:
               
chr24:27220278-27219914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
69-232
               

               
Cow position:
               
chr24:10213392-10213555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
99, 134
               

               
Conread position:
               
69-424
               

               
Cow position:
               
chr24:19800663-19801013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 85
               

               
Conread position:
               
70-338
               

               
Cow position:
               
chr24:16895618-16895351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
70-358
               

               
Cow position:
               
chr24:18017047-18017336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
71-424
               

               
Cow position:
               
chr24:18999866-19000217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
72-338
               

               
Cow position:
               
chr24:43683652-43683376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
72-422
               

               
Cow position:
               
chr24:29586813-29587172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
72-424
               

               
Cow position:
               
chr24:10299903-10300253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
75-387
               

               
Cow position:
               
chr24:12200590-12200270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 158
               

               
Conread position:
               
76-409
               

               
Cow position:
               
chr24:25092354-25092683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
83-387
               

               
Cow position:
               
chr24:35576704-35576398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 131
               

               
Conread position:
               
83-414
               

               
Cow position:
               
chr24:27630234-27630563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr24:28289405-28289157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
95-424
               

               
Cow position:
               
chr24:7777773-7777460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
227, 25
               

               
Conread position:
               
96-424
               

               
Cow position:
               
chr24:18281791-18281461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 104
               

               
Conread position:
               
97-423
               

               
Cow position:
               
chr24:4724818-4725132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
99-415
               

               
Cow position:
               
chr24:17752266-17751943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
101-421
               

               
Cow position:
               
chr24:37395359-37395036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
108-420
               

               
Cow position:
               
chr24:28233904-28234211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
91, 63
               

               
Conread position:
               
108-424
               

               
Cow position:
               
chr24:39523591-39523276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr24:23863778-23863454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 99
               

               
Conread position:
               
109-424
               

               
Cow position:
               
chr24:32739417-32739089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
112-422
               

               
Cow position:
               
chr24:14550657-14550962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
74, 54
               

               
Conread position:
               
112-424
               

               
Cow position:
               
chr24:389960-390274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
112-424
               

               
Cow position:
               
chr24:38006846-38006538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
113-423
               

               
Cow position:
               
chr24:10242921-10242612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
114-411
               

               
Cow position:
               
chr24:26880628-26880916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
142, 8
               

               
Conread position:
               
114-423
               

               
Cow position:
               
chr24:32190930-32191231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr24:35631854-35632142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
120-422
               

               
Cow position:
               
chr24:2359309-2359013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 89
               

               
Conread position:
               
123-421
               

               
Cow position:
               
chr24:27713534-27713239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
126-414
               

               
Cow position:
               
chr24:29561701-29561415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 224
               

               
Conread position:
               
131-419
               

               
Cow position:
               
chr24:37267539-37267834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
134-402
               

               
Cow position:
               
chr24:25263859-25263584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
138-424
               

               
Cow position:
               
chr24:37975096-37974809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 211
               

               
Conread position:
               
141-424
               

               
Cow position:
               
chr24:20364519-20364242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
142-422
               

               
Cow position:
               
chr24:3656477-3656192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
149-424
               

               
Cow position:
               
chr24:37823426-37823698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr24:230191-230454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
167-421
               

               
Cow position:
               
chr24:2992960-2992709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
186, 7
               

               
Conread position:
               
168-422
               

               
Cow position:
               
chr24:39911119-39910859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
169-422
               

               
Cow position:
               
chr24:13587069-13586819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
169-422
               

               
Cow position:
               
chr24:21835043-21834791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
170-424
               

               
Cow position:
               
chr24:27284740-27284998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
146, 23
               

               
Conread position:
               
171-424
               

               
Cow position:
               
chr24:18474808-18474555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
103, 15
               

               
Conread position:
               
182-420
               

               
Cow position:
               
chr24:29539999-29539760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
189-420
               

               
Cow position:
               
chr24:6742158-6742395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
193-422
               

               
Cow position:
               
chr24:19730720-19730954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
193-422
               

               
Cow position:
               
chr24:23575221-23574987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
195-421
               

               
Cow position:
               
chr24:15288770-15288998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
197-415
               

               
Cow position:
               
chr24:25122288-25122502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 78
               

               
Conread position:
               
197-423
               

               
Cow position:
               
chr24:5360663-5360884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
6, 78
               

               
Conread position:
               
198-424
               

               
Cow position:
               
chr24:18137360-18137126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
200-428
               

               
Cow position:
               
chr24:26001335-26001566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
69, 193
               

               
Conread position:
               
202-415
               

               
Cow position:
               
chr24:11036885-11036672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 147
               

               
Conread position:
               
203-424
               

               
Cow position:
               
chr24:28510748-28510965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 92
               

               
Conread position:
               
206-411
               

               
Cow position:
               
chr24:32230554-32230343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 169
               

               
Conread position:
               
214-422
               

               
Cow position:
               
chr24:17309175-17308969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
217-422
               

               
Cow position:
               
chr24:22567068-22567278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
220-422
               

               
Cow position:
               
chr24:17689643-17689439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
223-424
               

               
Cow position:
               
chr24:32979197-32979001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
253-422
               

               
Cow position:
               
chr24:22419961-22420134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 156
               

               
Conread position:
               
268-415
               

               
Cow position:
               
chr24:26588237-26588383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
268-422
               

               
Cow position:
               
chr24:37252174-37252329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
268-424
               

               
Cow position:
               
chr24:25947845-25947685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
268-424
               

               
Cow position:
               
chr24:26808608-26808765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
270-422
               

               
Cow position:
               
chr24:4635149-4634993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
273-420
               

               
Cow position:
               
chr24:24540469-24540322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
273-422
               

               
Cow position:
               
chr24:3193251-3193099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 105
               

               
Conread position:
               
273-424
               

               
Cow position:
               
chr24:20017406-20017251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
275-421
               

               
Cow position:
               
chr24:22641113-22641263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
275-422
               

               
Cow position:
               
chr24:18750731-18750882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
275-422
               

               
Cow position:
               
chr24:31383139-31383280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
275-422
               

               
Cow position:
               
chr24:35310749-35310899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 60
               

               
Conread position:
               
275-423
               

               
Cow position:
               
chr24:18405257-18405107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
275-424
               

               
Cow position:
               
chr24:16640934-16641087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
275-424
               

               
Cow position:
               
chr24:28256035-28255889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 88
               

               
Conread position:
               
275-424
               

               
Cow position:
               
chr24:36286593-36286742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
275-424
               

               
Cow position:
               
chr24:43445990-43445837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
276-422
               

               
Cow position:
               
chr24:16303652-16303512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
276-424
               

               
Cow position:
               
chr24:38428088-38427936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
278-422
               

               
Cow position:
               
chr24:6488235-6488376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
281-412
               

               
Cow position:
               
chr24:42008047-42008181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
283-424
               

               
Cow position:
               
chr24:885413-885271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               
Show alignments to all cow chromosomes.