Cow genome map
| Conread name: | Emb1-C0005216_G08 |
| Conread position: | 303-595 |
| Cow position: | chr25:26457800-26457501 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 306-583 |
| Cow position: | chr25:13562317-13562595 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 6, 230 |
| Conread position: | 312-595 |
| Cow position: | chr25:15368589-15368869 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 145, 33 |
| Conread position: | 316-451 |
| Cow position: | chr25:107190-107056 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 320-463 |
| Cow position: | chr25:36644054-36643915 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 320-572 |
| Cow position: | chr25:33205181-33204930 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 321-573 |
| Cow position: | chr25:8080621-8080879 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 148 |
| Conread position: | 323-589 |
| Cow position: | chr25:20625027-20624768 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 324-530 |
| Cow position: | chr25:7480113-7480308 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 324-535 |
| Cow position: | chr25:33411163-33411373 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 324-536 |
| Cow position: | chr25:11989605-11989397 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 324-541 |
| Cow position: | chr25:22542900-22542692 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 155, 73 |
| Conread position: | 324-589 |
| Cow position: | chr25:26240440-26240708 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 85 |
| Conread position: | 325-555 |
| Cow position: | chr25:10748592-10748365 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 325-556 |
| Cow position: | chr25:10012142-10011924 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 325-583 |
| Cow position: | chr25:23410567-23410822 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 141 |
| Conread position: | 325-589 |
| Cow position: | chr25:29215486-29215236 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 325-595 |
| Cow position: | chr25:8512187-8511916 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 155 |
| Conread position: | 327-499 |
| Cow position: | chr25:22736021-22736194 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 50 |
| Conread position: | 327-504 |
| Cow position: | chr25:9519226-9519404 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 327-519 |
| Cow position: | chr25:17365354-17365168 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 327-520 |
| Cow position: | chr25:16560270-16560073 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 327-535 |
| Cow position: | chr25:16007699-16007896 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 327-546 |
| Cow position: | chr25:32606416-32606200 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 181, 58 |
| Conread position: | 327-546 |
| Cow position: | chr25:33112062-33111849 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 327-554 |
| Cow position: | chr25:40957082-40956853 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 65, 181 |
| Conread position: | 327-581 |
| Cow position: | chr25:18161191-18161445 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 90 |
| Conread position: | 327-585 |
| Cow position: | chr25:14467174-14466934 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 243, 67 |
| Conread position: | 327-587 |
| Cow position: | chr25:12932536-12932793 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 327-587 |
| Cow position: | chr25:34970369-34970622 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 92 |
| Conread position: | 327-587 |
| Cow position: | chr25:36501331-36501073 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 327-588 |
| Cow position: | chr25:24405830-24405565 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 327-589 |
| Cow position: | chr25:24136530-24136276 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 327-593 |
| Cow position: | chr25:14570277-14570540 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 175 |
| Conread position: | 327-595 |
| Cow position: | chr25:8576599-8576869 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 327-595 |
| Cow position: | chr25:18000624-18000355 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 57 |
| Conread position: | 328-515 |
| Cow position: | chr25:36081783-36081971 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 328-531 |
| Cow position: | chr25:10504431-10504229 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 154, 32 |
| Conread position: | 328-531 |
| Cow position: | chr25:13569264-13569064 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 328-553 |
| Cow position: | chr25:28188040-28187810 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 70 |
| Conread position: | 328-589 |
| Cow position: | chr25:14075209-14075472 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 328-589 |
| Cow position: | chr25:26654816-26655080 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 99, 65 |
| Conread position: | 329-448 |
| Cow position: | chr25:8560771-8560893 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 329-474 |
| Cow position: | chr25:12239240-12239093 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 120, 58 |
| Conread position: | 329-515 |
| Cow position: | chr25:16714360-16714174 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 23 |
| Conread position: | 329-585 |
| Cow position: | chr25:33691465-33691715 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 329-589 |
| Cow position: | chr25:20076400-20076667 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 329-595 |
| Cow position: | chr25:18266067-18266338 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 191 |
| Conread position: | 330-524 |
| Cow position: | chr25:22751101-22750902 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 331-519 |
| Cow position: | chr25:34669155-34669342 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 331-531 |
| Cow position: | chr25:21893245-21893450 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 331-555 |
| Cow position: | chr25:34379199-34378970 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 63, 203 |
| Conread position: | 331-587 |
| Cow position: | chr25:5407648-5407900 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 181 |
| Conread position: | 331-589 |
| Cow position: | chr25:22575611-22575360 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 108, 69 |
| Conread position: | 333-558 |
| Cow position: | chr25:16691575-16691795 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 334-459 |
| Cow position: | chr25:37372709-37372587 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 337-531 |
| Cow position: | chr25:22730744-22730940 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 53 |
| Conread position: | 337-586 |
| Cow position: | chr25:13560295-13560048 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 337-595 |
| Cow position: | chr25:34768816-34768553 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 31 |
| Conread position: | 338-555 |
| Cow position: | chr25:20811455-20811238 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 115, 61 |
| Conread position: | 338-589 |
| Cow position: | chr25:27535003-27534750 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 349-555 |
| Cow position: | chr25:22909930-22909725 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 352-534 |
| Cow position: | chr25:15358431-15358253 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 353-588 |
| Cow position: | chr25:33245852-33246081 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 112, 152 |
| Conread position: | 353-595 |
| Cow position: | chr25:29312409-29312161 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 354-589 |
| Cow position: | chr25:23248805-23248572 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 355-515 |
| Cow position: | chr25:13727453-13727292 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 363-589 |
| Cow position: | chr25:18239448-18239680 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 373-595 |
| Cow position: | chr25:4716210-4716432 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 377-589 |
| Cow position: | chr25:6177987-6178203 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 113 |
| Conread position: | 378-595 |
| Cow position: | chr25:19524475-19524268 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 212, 73 |
| Conread position: | 380-595 |
| Cow position: | chr25:30021030-30021249 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 390-589 |
| Cow position: | chr25:20428285-20428487 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 391-589 |
| Cow position: | chr25:18448780-18448980 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 396-589 |
| Cow position: | chr25:13321153-13321347 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 402-582 |
| Cow position: | chr25:41094157-41093975 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 420-589 |
| Cow position: | chr25:5365525-5365701 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 156 |
| Conread position: | 438-595 |
| Cow position: | chr25:20885068-20884914 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 442-589 |
| Cow position: | chr25:10204646-10204499 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 444-589 |
| Cow position: | chr25:18228202-18228345 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.