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Cow genome map

           
Conread name:
           
Emb1-C0005216_G08
        

               
Conread position:
               
293-581
               

               
Cow position:
               
chr5:18104239-18103958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
294-589
               

               
Cow position:
               
chr5:41945747-41946044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 236
               

               
Conread position:
               
309-587
               

               
Cow position:
               
chr5:49474634-49474339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
313-541
               

               
Cow position:
               
chr5:34184149-34184373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
313-589
               

               
Cow position:
               
chr5:29844198-29844478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
133, 78
               

               
Conread position:
               
314-510
               

               
Cow position:
               
chr5:67212275-67212481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
314-550
               

               
Cow position:
               
chr5:57365182-57364942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
314-603
               

               
Cow position:
               
chr5:18276409-18276689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
315-589
               

               
Cow position:
               
chr5:46798167-46798440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
315-595
               

               
Cow position:
               
chr5:28035661-28035948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
316-595
               

               
Cow position:
               
chr5:23529358-23529078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
134, 111
               

               
Conread position:
               
316-595
               

               
Cow position:
               
chr5:40711512-40711242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
318-589
               

               
Cow position:
               
chr5:38738722-38738980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
320-588
               

               
Cow position:
               
chr5:68082045-68081784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
320-596
               

               
Cow position:
               
chr5:56153536-56153823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
321-535
               

               
Cow position:
               
chr5:19905340-19905139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
321-550
               

               
Cow position:
               
chr5:59449647-59449414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
7, 187
               

               
Conread position:
               
322-589
               

               
Cow position:
               
chr5:67150084-67149820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
323-535
               

               
Cow position:
               
chr5:32282264-32282477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chr5:12803442-12803616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 93
               

               
Conread position:
               
324-513
               

               
Cow position:
               
chr5:40270957-40271149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
324-520
               

               
Cow position:
               
chr5:55989679-55989869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
324-587
               

               
Cow position:
               
chr5:39695580-39695847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
324-587
               

               
Cow position:
               
chr5:41598783-41598516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
324-592
               

               
Cow position:
               
chr5:3442394-3442644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
325-451
               

               
Cow position:
               
chr5:45940683-45940554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
325-514
               

               
Cow position:
               
chr5:27175797-27175985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
325-519
               

               
Cow position:
               
chr5:22934519-22934328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
325-589
               

               
Cow position:
               
chr5:49945843-49946103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
325-589
               

               
Cow position:
               
chr5:64398944-64399201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 74
               

               
Conread position:
               
326-514
               

               
Cow position:
               
chr5:54111854-54112036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
110, 41
               

               
Conread position:
               
326-521
               

               
Cow position:
               
chr5:64758839-64758637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 60
               

               
Conread position:
               
326-547
               

               
Cow position:
               
chr5:48535735-48535944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 71
               

               
Conread position:
               
326-587
               

               
Cow position:
               
chr5:37068822-37069077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
156, 71
               

               
Conread position:
               
327-448
               

               
Cow position:
               
chr5:65924758-65924638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
327-477
               

               
Cow position:
               
chr5:39181977-39181831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
327-496
               

               
Cow position:
               
chr5:70581963-70581793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
327-513
               

               
Cow position:
               
chr5:37713964-37713778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
327-519
               

               
Cow position:
               
chr5:21535181-21534983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
327-519
               

               
Cow position:
               
chr5:72172961-72173145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
327-526
               

               
Cow position:
               
chr5:26046268-26046457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
114, 50
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chr5:6896193-6895988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
327-532
               

               
Cow position:
               
chr5:38805415-38805203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
327-533
               

               
Cow position:
               
chr5:13906802-13906995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
327-533
               

               
Cow position:
               
chr5:36407092-36407293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
327-533
               

               
Cow position:
               
chr5:44417415-44417220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
327-533
               

               
Cow position:
               
chr5:65044132-65043932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
327-534
               

               
Cow position:
               
chr5:43110497-43110692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
327-536
               

               
Cow position:
               
chr5:17869623-17869830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 178
               

               
Conread position:
               
327-537
               

               
Cow position:
               
chr5:33265524-33265320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
168, 54
               

               
Conread position:
               
327-538
               

               
Cow position:
               
chr5:31561467-31561681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
327-541
               

               
Cow position:
               
chr5:4927633-4927417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
119, 134
               

               
Conread position:
               
327-541
               

               
Cow position:
               
chr5:22839539-22839330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
75, 173
               

               
Conread position:
               
327-541
               

               
Cow position:
               
chr5:73556258-73556047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
327-548
               

               
Cow position:
               
chr5:73526312-73526523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
327-555
               

               
Cow position:
               
chr5:3752791-3753014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
327-574
               

               
Cow position:
               
chr5:30978293-30978538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
327-585
               

               
Cow position:
               
chr5:25899937-25899682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
327-585
               

               
Cow position:
               
chr5:48573835-48573587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
327-586
               

               
Cow position:
               
chr5:1343921-1343662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 192
               

               
Conread position:
               
327-586
               

               
Cow position:
               
chr5:17267961-17267699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 241
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr5:27411464-27411210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr5:30332877-30333146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr5:41334539-41334805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 104
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr5:49567364-49567617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chr5:23366831-23366572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:13044460-13044214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:14154081-14154340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 227
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:18553829-18554084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 79
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:18695111-18695353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:31660717-31660463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:41636804-41637060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr5:56385163-56385411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
327-592
               

               
Cow position:
               
chr5:4631053-4631297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
327-593
               

               
Cow position:
               
chr5:63188392-63188129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 208
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:3649524-3649259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:17028026-17028300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:27615448-27615717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 133
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:39442228-39442501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:48405245-48404991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 159
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:54089967-54090238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr5:58748701-58748972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 218
               

               
Conread position:
               
327-600
               

               
Cow position:
               
chr5:51502943-51503207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
328-477
               

               
Cow position:
               
chr5:17630942-17630795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
328-504
               

               
Cow position:
               
chr5:43402834-43403018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
328-505
               

               
Cow position:
               
chr5:55928875-55929058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
328-509
               

               
Cow position:
               
chr5:18289064-18289241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
154, 63
               

               
Conread position:
               
328-509
               

               
Cow position:
               
chr5:32696887-32696704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chr5:41165020-41165208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
328-511
               

               
Cow position:
               
chr5:51935126-51935310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
328-512
               

               
Cow position:
               
chr5:30805102-30805284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
328-515
               

               
Cow position:
               
chr5:13717633-13717446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
328-515
               

               
Cow position:
               
chr5:26262740-26262555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
328-515
               

               
Cow position:
               
chr5:54375573-54375378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
328-515
               

               
Cow position:
               
chr5:58446737-58446931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chr5:19752239-19752435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chr5:52000156-52000351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
328-530
               

               
Cow position:
               
chr5:60747344-60747142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
154, 166
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chr5:458425-458628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chr5:43992256-43992464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
328-532
               

               
Cow position:
               
chr5:23678768-23678562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
328-539
               

               
Cow position:
               
chr5:21828800-21829016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
119, 187
               

               
Conread position:
               
328-544
               

               
Cow position:
               
chr5:31923306-31923526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
328-547
               

               
Cow position:
               
chr5:45420199-45419980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
328-555
               

               
Cow position:
               
chr5:6891084-6890859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 111
               

               
Conread position:
               
328-585
               

               
Cow position:
               
chr5:66189922-66190178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
328-595
               

               
Cow position:
               
chr5:28946128-28945856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 258
               

               
Conread position:
               
329-501
               

               
Cow position:
               
chr5:36486429-36486603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
112, 86
               

               
Conread position:
               
329-510
               

               
Cow position:
               
chr5:16214619-16214807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chr5:35209541-35209354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
329-515
               

               
Cow position:
               
chr5:7552483-7552291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
329-537
               

               
Cow position:
               
chr5:61488173-61487966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 80
               

               
Conread position:
               
329-538
               

               
Cow position:
               
chr5:1688178-1687968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
329-573
               

               
Cow position:
               
chr5:26595171-26594917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
329-586
               

               
Cow position:
               
chr5:48757876-48758135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
329-587
               

               
Cow position:
               
chr5:58320532-58320275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
329-588
               

               
Cow position:
               
chr5:47681071-47680820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
329-588
               

               
Cow position:
               
chr5:57381476-57381742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
108, 59
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chr5:29756274-29756534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chr5:39875060-39875322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chr5:40387939-40387684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
329-595
               

               
Cow position:
               
chr5:46611163-46610893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
330-524
               

               
Cow position:
               
chr5:63234890-63234696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
72, 78
               

               
Conread position:
               
330-525
               

               
Cow position:
               
chr5:68481174-68481356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr5:59627038-59626833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
330-536
               

               
Cow position:
               
chr5:26376489-26376689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
330-541
               

               
Cow position:
               
chr5:48143849-48143639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
72, 90
               

               
Conread position:
               
330-588
               

               
Cow position:
               
chr5:59303339-59303095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
330-589
               

               
Cow position:
               
chr5:27102858-27102596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
331-524
               

               
Cow position:
               
chr5:62142607-62142809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
331-587
               

               
Cow position:
               
chr5:47836483-47836745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 179
               

               
Conread position:
               
331-589
               

               
Cow position:
               
chr5:27419792-27419531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
331-592
               

               
Cow position:
               
chr5:1950126-1949857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 179
               

               
Conread position:
               
331-595
               

               
Cow position:
               
chr5:41604562-41604828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
332-515
               

               
Cow position:
               
chr5:37646607-37646420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
332-587
               

               
Cow position:
               
chr5:38629228-38629482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
333-586
               

               
Cow position:
               
chr5:27007838-27008089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
335-589
               

               
Cow position:
               
chr5:34441850-34441583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
337-515
               

               
Cow position:
               
chr5:22643282-22643108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
337-524
               

               
Cow position:
               
chr5:41713240-41713432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
337-589
               

               
Cow position:
               
chr5:68330045-68329791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
337-593
               

               
Cow position:
               
chr5:25919689-25919433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
337-601
               

               
Cow position:
               
chr5:40234064-40234321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
47, 163
               

               
Conread position:
               
342-518
               

               
Cow position:
               
chr5:2267206-2267374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
344-592
               

               
Cow position:
               
chr5:23536120-23536376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
345-595
               

               
Cow position:
               
chr5:34279650-34279407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
352-561
               

               
Cow position:
               
chr5:57101568-57101358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 168
               

               
Conread position:
               
352-595
               

               
Cow position:
               
chr5:45396453-45396208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
354-530
               

               
Cow position:
               
chr5:5257791-5257958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
355-485
               

               
Cow position:
               
chr5:60646918-60647048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
355-588
               

               
Cow position:
               
chr5:36487735-36487498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
355-589
               

               
Cow position:
               
chr5:48178426-48178184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
355-595
               

               
Cow position:
               
chr5:15482995-15483240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 33
               

               
Conread position:
               
360-555
               

               
Cow position:
               
chr5:49656056-49655864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
360-589
               

               
Cow position:
               
chr5:34914589-34914359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
42, 198
               

               
Conread position:
               
361-595
               

               
Cow position:
               
chr5:21195147-21194918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
364-535
               

               
Cow position:
               
chr5:28494403-28494237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
372-509
               

               
Cow position:
               
chr5:62415986-62415842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
374-586
               

               
Cow position:
               
chr5:25681371-25681166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
374-588
               

               
Cow position:
               
chr5:50425502-50425291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
376-588
               

               
Cow position:
               
chr5:6987433-6987642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
379-588
               

               
Cow position:
               
chr5:58343841-58344055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
384-586
               

               
Cow position:
               
chr5:44151504-44151290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
389-588
               

               
Cow position:
               
chr5:15837897-15837698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
389-589
               

               
Cow position:
               
chr5:21531112-21530912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
389-589
               

               
Cow position:
               
chr5:23527638-23527432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
390-555
               

               
Cow position:
               
chr5:41907035-41907193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
391-587
               

               
Cow position:
               
chr5:1349797-1349598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
391-589
               

               
Cow position:
               
chr5:41605806-41605619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
393-589
               

               
Cow position:
               
chr5:63328894-63328702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
396-555
               

               
Cow position:
               
chr5:75687329-75687162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
396-589
               

               
Cow position:
               
chr5:69773556-69773740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
150, 36
               

               
Conread position:
               
399-513
               

               
Cow position:
               
chr5:40657135-40657251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
399-549
               

               
Cow position:
               
chr5:54532993-54533142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
408-595
               

               
Cow position:
               
chr5:23640997-23640814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
182, 7
               

               
Conread position:
               
413-555
               

               
Cow position:
               
chr5:3225954-3225816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
416-587
               

               
Cow position:
               
chr5:36028124-36027954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
416-598
               

               
Cow position:
               
chr5:42316888-42316707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
421-544
               

               
Cow position:
               
chr5:2819287-2819411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
421-587
               

               
Cow position:
               
chr5:38936560-38936399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
421-589
               

               
Cow position:
               
chr5:3058949-3059115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
149, 131
               

               
Conread position:
               
422-564
               

               
Cow position:
               
chr5:7433133-7432986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
422-589
               

               
Cow position:
               
chr5:34906108-34906267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
424-588
               

               
Cow position:
               
chr5:21356857-21356695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
427-589
               

               
Cow position:
               
chr5:45558955-45559119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
80, 136
               

               
Conread position:
               
430-589
               

               
Cow position:
               
chr5:27293630-27293472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
432-587
               

               
Cow position:
               
chr5:37272433-37272585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
439-555
               

               
Cow position:
               
chr5:17097759-17097874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
443-555
               

               
Cow position:
               
chr5:39753603-39753491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
446-588
               

               
Cow position:
               
chr5:33697494-33697357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
449-589
               

               
Cow position:
               
chr5:39134203-39134062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
463-587
               

               
Cow position:
               
chr5:48067770-48067894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
467-589
               

               
Cow position:
               
chr5:17944200-17944321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
474-594
               

               
Cow position:
               
chr5:26370283-26370404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               
Show alignments to all cow chromosomes.