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Cow genome map

           
Conread name:
           
Emb1-C0005216_G08
        

               
Conread position:
               
309-585
               

               
Cow position:
               
chr6:32412703-32412434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
314-585
               

               
Cow position:
               
chr6:10237272-10237541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
315-588
               

               
Cow position:
               
chr6:27815543-27815269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 207
               

               
Conread position:
               
317-513
               

               
Cow position:
               
chr6:7253196-7253005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
318-588
               

               
Cow position:
               
chr6:51840213-51840496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
318-595
               

               
Cow position:
               
chr6:7824700-7824965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
318-595
               

               
Cow position:
               
chr6:63197226-63196944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
319-530
               

               
Cow position:
               
chr6:44511184-44511389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
319-535
               

               
Cow position:
               
chr6:19424644-19424854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
320-567
               

               
Cow position:
               
chr6:4079445-4079210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
320-588
               

               
Cow position:
               
chr6:24623034-24622768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
320-595
               

               
Cow position:
               
chr6:827767-827489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
321-586
               

               
Cow position:
               
chr6:33851857-33851592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 178
               

               
Conread position:
               
323-587
               

               
Cow position:
               
chr6:42617826-42618085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 86
               

               
Conread position:
               
323-619
               

               
Cow position:
               
chr6:510355-510063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chr6:65947134-65946960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
324-509
               

               
Cow position:
               
chr6:33984919-33985104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
324-575
               

               
Cow position:
               
chr6:16733351-16733612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 166
               

               
Conread position:
               
324-580
               

               
Cow position:
               
chr6:24583276-24583029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
324-586
               

               
Cow position:
               
chr6:6943735-6943478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
324-588
               

               
Cow position:
               
chr6:38914390-38914651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
324-589
               

               
Cow position:
               
chr6:37612055-37612317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
325-553
               

               
Cow position:
               
chr6:3078457-3078676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 150
               

               
Conread position:
               
325-555
               

               
Cow position:
               
chr6:44372001-44371763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
128, 91
               

               
Conread position:
               
325-560
               

               
Cow position:
               
chr6:9454235-9454465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 121
               

               
Conread position:
               
325-572
               

               
Cow position:
               
chr6:59588461-59588214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
325-589
               

               
Cow position:
               
chr6:22969027-22969268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
325-589
               

               
Cow position:
               
chr6:24557827-24558089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 136
               

               
Conread position:
               
325-595
               

               
Cow position:
               
chr6:24649799-24650061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
326-589
               

               
Cow position:
               
chr6:34549345-34549606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
327-435
               

               
Cow position:
               
chr6:47625015-47624908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
327-460
               

               
Cow position:
               
chr6:58315994-58316127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
327-475
               

               
Cow position:
               
chr6:32677137-32676985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
327-498
               

               
Cow position:
               
chr6:35415571-35415395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
327-503
               

               
Cow position:
               
chr6:47204423-47204601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
327-513
               

               
Cow position:
               
chr6:31526868-31526680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
327-526
               

               
Cow position:
               
chr6:40737053-40736856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 134
               

               
Conread position:
               
327-526
               

               
Cow position:
               
chr6:61218082-61217882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
327-529
               

               
Cow position:
               
chr6:10254186-10254377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chr6:7835863-7836067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chr6:15025941-15025740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chr6:32809223-32809434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chr6:55842209-55842011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
327-533
               

               
Cow position:
               
chr6:16634270-16634071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
327-535
               

               
Cow position:
               
chr6:50318102-50317887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
327-540
               

               
Cow position:
               
chr6:51387697-51387912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
327-541
               

               
Cow position:
               
chr6:2582818-2583023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
327-545
               

               
Cow position:
               
chr6:30474270-30474489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
110, 40
               

               
Conread position:
               
327-548
               

               
Cow position:
               
chr6:47327118-47326909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
327-550
               

               
Cow position:
               
chr6:8318216-8317994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 148
               

               
Conread position:
               
327-555
               

               
Cow position:
               
chr6:7173805-7173576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
68, 177
               

               
Conread position:
               
327-571
               

               
Cow position:
               
chr6:42693323-42693559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 90
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr6:6596528-6596775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr6:38018211-38018466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr6:54144253-54144512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chr6:57118990-57118737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chr6:4023043-4023312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chr6:6995007-6994748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 137
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chr6:15782574-15782304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chr6:19427401-19427656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:40705-40440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:17534567-17534307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:20255450-20255195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:24223210-24222947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:24545558-24545825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:28278641-28278883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:31425615-31425348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
84, 79
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:47616661-47616410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:54479205-54478939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 83
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chr6:56860497-56860750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
327-593
               

               
Cow position:
               
chr6:47026425-47026693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:9026465-9026732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 215
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:14658549-14658818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:15997269-15997002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 202
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:30160271-30160536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:35775036-35774764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:48572936-48572665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 231
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:53673807-53674079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 207
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chr6:56376404-56376134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 210
               

               
Conread position:
               
327-603
               

               
Cow position:
               
chr6:52556528-52556272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
195, 50
               

               
Conread position:
               
328-503
               

               
Cow position:
               
chr6:38614764-38614938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
328-503
               

               
Cow position:
               
chr6:59633082-59633262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
328-504
               

               
Cow position:
               
chr6:47799240-47799420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chr6:61142616-61142428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 69
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chr6:66531873-66531688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chr6:66874298-66874483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 95
               

               
Conread position:
               
328-515
               

               
Cow position:
               
chr6:67950901-67951087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
328-516
               

               
Cow position:
               
chr6:15447255-15447058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
328-521
               

               
Cow position:
               
chr6:52901182-52901382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chr6:35435940-35436141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
123, 188
               

               
Conread position:
               
328-529
               

               
Cow position:
               
chr6:5302468-5302268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
328-529
               

               
Cow position:
               
chr6:8788089-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
328-529
               

               
Cow position:
               
chr6:36470618-36470412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 190
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chr6:582324-582119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 63
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chr6:54867462-54867671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
328-535
               

               
Cow position:
               
chr6:21736940-21736736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
328-535
               

               
Cow position:
               
chr6:37739137-37739331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
328-588
               

               
Cow position:
               
chr6:7190171-7189902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
328-589
               

               
Cow position:
               
chr6:38453823-38453570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
328-589
               

               
Cow position:
               
chr6:41679034-41679292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
328-590
               

               
Cow position:
               
chr6:37462970-37463236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
328-593
               

               
Cow position:
               
chr6:24004491-24004754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
328-606
               

               
Cow position:
               
chr6:38641442-38641718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
329-475
               

               
Cow position:
               
chr6:12542984-12542833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
329-510
               

               
Cow position:
               
chr6:58073997-58074181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chr6:41375719-41375905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 64
               

               
Conread position:
               
329-541
               

               
Cow position:
               
chr6:33929601-33929383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 188
               

               
Conread position:
               
329-587
               

               
Cow position:
               
chr6:32276896-32277151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
329-587
               

               
Cow position:
               
chr6:55475202-55475465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
329-588
               

               
Cow position:
               
chr6:6367720-6367463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
329-588
               

               
Cow position:
               
chr6:10487536-10487786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chr6:28477127-28477379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 50
               

               
Conread position:
               
329-594
               

               
Cow position:
               
chr6:3545640-3545893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
330-518
               

               
Cow position:
               
chr6:2366161-2365972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
330-524
               

               
Cow position:
               
chr6:35993536-35993730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr6:16675752-16675962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
330-531
               

               
Cow position:
               
chr6:68652403-68652197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 186
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chr6:4164218-4163961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 169
               

               
Conread position:
               
330-593
               

               
Cow position:
               
chr6:36194544-36194809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
330-595
               

               
Cow position:
               
chr6:36652369-36652636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 193
               

               
Conread position:
               
330-595
               

               
Cow position:
               
chr6:45065066-45064798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
331-533
               

               
Cow position:
               
chr6:28137602-28137793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
331-541
               

               
Cow position:
               
chr6:41265071-41265274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
331-582
               

               
Cow position:
               
chr6:51294234-51294490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
331-587
               

               
Cow position:
               
chr6:16625892-16626155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
331-588
               

               
Cow position:
               
chr6:47574857-47575120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
331-589
               

               
Cow position:
               
chr6:20196343-20196096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
331-589
               

               
Cow position:
               
chr6:20754343-20754090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
332-587
               

               
Cow position:
               
chr6:28084064-28083803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
332-620
               

               
Cow position:
               
chr6:18582858-18582570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
333-520
               

               
Cow position:
               
chr6:31635739-31635541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 184
               

               
Conread position:
               
335-548
               

               
Cow position:
               
chr6:58331841-58332059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
337-481
               

               
Cow position:
               
chr6:59508313-59508459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
337-515
               

               
Cow position:
               
chr6:28977087-28976902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 181
               

               
Conread position:
               
337-530
               

               
Cow position:
               
chr6:55643494-55643308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
337-588
               

               
Cow position:
               
chr6:50034775-50034524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 172
               

               
Conread position:
               
337-589
               

               
Cow position:
               
chr6:36454634-36454384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
337-594
               

               
Cow position:
               
chr6:54062619-54062878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 221
               

               
Conread position:
               
337-617
               

               
Cow position:
               
chr6:65871849-65872129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
339-524
               

               
Cow position:
               
chr6:19446212-19446397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
344-589
               

               
Cow position:
               
chr6:2899607-2899354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
348-583
               

               
Cow position:
               
chr6:32798905-32798670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 207
               

               
Conread position:
               
353-530
               

               
Cow position:
               
chr6:42566827-42567007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 150
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr6:41656071-41655825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
353-589
               

               
Cow position:
               
chr6:43760341-43760565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
355-538
               

               
Cow position:
               
chr6:19465892-19466075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
355-589
               

               
Cow position:
               
chr6:47858263-47858501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 157
               

               
Conread position:
               
356-586
               

               
Cow position:
               
chr6:60503353-60503582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 154
               

               
Conread position:
               
357-557
               

               
Cow position:
               
chr6:1008854-1009045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
360-595
               

               
Cow position:
               
chr6:13718742-13718983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 210
               

               
Conread position:
               
361-589
               

               
Cow position:
               
chr6:34235433-34235202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
362-589
               

               
Cow position:
               
chr6:47885040-47884815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
362-595
               

               
Cow position:
               
chr6:30701425-30701660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
367-517
               

               
Cow position:
               
chr6:50760787-50760939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
372-587
               

               
Cow position:
               
chr6:52002349-52002561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
373-521
               

               
Cow position:
               
chr6:46330912-46331064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 138
               

               
Conread position:
               
374-530
               

               
Cow position:
               
chr6:50271113-50270959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
376-595
               

               
Cow position:
               
chr6:6161595-6161815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
377-595
               

               
Cow position:
               
chr6:64427220-64427444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
380-589
               

               
Cow position:
               
chr6:28795337-28795545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
381-535
               

               
Cow position:
               
chr6:52604779-52604625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
382-595
               

               
Cow position:
               
chr6:46676428-46676213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
386-529
               

               
Cow position:
               
chr6:29754823-29754676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
387-582
               

               
Cow position:
               
chr6:1890571-1890373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
132, 29
               

               
Conread position:
               
389-582
               

               
Cow position:
               
chr6:18469218-18469033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
390-587
               

               
Cow position:
               
chr6:16220051-16219851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
391-555
               

               
Cow position:
               
chr6:29412774-29412611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
393-595
               

               
Cow position:
               
chr6:59496230-59496431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
394-589
               

               
Cow position:
               
chr6:53264793-53264590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
395-595
               

               
Cow position:
               
chr6:12421277-12421071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
399-589
               

               
Cow position:
               
chr6:37054007-37054195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
400-535
               

               
Cow position:
               
chr6:65852687-65852821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
406-595
               

               
Cow position:
               
chr6:41041952-41042135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
184, 30
               

               
Conread position:
               
416-522
               

               
Cow position:
               
chr6:38895074-38894968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
416-595
               

               
Cow position:
               
chr6:47192490-47192307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
417-556
               

               
Cow position:
               
chr6:7498425-7498289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
417-592
               

               
Cow position:
               
chr6:11790009-11790190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
421-595
               

               
Cow position:
               
chr6:15943962-15943782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 142
               

               
Conread position:
               
423-593
               

               
Cow position:
               
chr6:28164866-28165041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
424-592
               

               
Cow position:
               
chr6:7707176-7707348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
427-572
               

               
Cow position:
               
chr6:29649151-29649300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
430-589
               

               
Cow position:
               
chr6:47624830-47624675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 99
               

               
Conread position:
               
439-603
               

               
Cow position:
               
chr6:36892268-36892107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
150, 10
               

               
Conread position:
               
444-593
               

               
Cow position:
               
chr6:17708208-17708065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
446-553
               

               
Cow position:
               
chr6:15753912-15754018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               
Show alignments to all cow chromosomes.