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Cow genome map

           
Conread name:
           
Emb1-C0005216_G08
        

               
Conread position:
               
287-529
               

               
Cow position:
               
chrX:33590629-33590853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
303-595
               

               
Cow position:
               
chrX:6367869-6367567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
12, 93
               

               
Conread position:
               
309-589
               

               
Cow position:
               
chrX:38999771-39000047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
319-588
               

               
Cow position:
               
chrX:36840801-36841058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
320-518
               

               
Cow position:
               
chrX:7345013-7345211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
321-461
               

               
Cow position:
               
chrX:25232518-25232659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
323-548
               

               
Cow position:
               
chrX:6656314-6656540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
323-577
               

               
Cow position:
               
chrX:26940571-26940331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
323-587
               

               
Cow position:
               
chrX:47178085-47178339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
109, 70
               

               
Conread position:
               
324-449
               

               
Cow position:
               
chrX:8913849-8913977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
324-449
               

               
Cow position:
               
chrX:8915593-8915721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
324-587
               

               
Cow position:
               
chrX:25713725-25713992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
325-514
               

               
Cow position:
               
chrX:35925888-35926081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
325-515
               

               
Cow position:
               
chrX:39546042-39545857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
325-538
               

               
Cow position:
               
chrX:16284010-16283795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
325-585
               

               
Cow position:
               
chrX:28787287-28787535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
325-589
               

               
Cow position:
               
chrX:18287147-18286884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 208
               

               
Conread position:
               
327-435
               

               
Cow position:
               
chrX:29056050-29056158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
327-451
               

               
Cow position:
               
chrX:18417654-18417534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
327-451
               

               
Cow position:
               
chrX:46146629-46146505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
327-458
               

               
Cow position:
               
chrX:17896016-17895884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
327-481
               

               
Cow position:
               
chrX:157840-157687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
327-509
               

               
Cow position:
               
chrX:25571062-25570875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
327-515
               

               
Cow position:
               
chrX:9161519-9161700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
327-516
               

               
Cow position:
               
chrX:40642921-40643104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
48, 135
               

               
Conread position:
               
327-518
               

               
Cow position:
               
chrX:13323063-13322862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 185
               

               
Conread position:
               
327-526
               

               
Cow position:
               
chrX:2029325-2029521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
327-529
               

               
Cow position:
               
chrX:30162931-30163144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chrX:12725672-12725868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chrX:22481847-22481646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chrX:28580161-28580360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chrX:39097454-39097649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
327-541
               

               
Cow position:
               
chrX:18216220-18216419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 60
               

               
Conread position:
               
327-541
               

               
Cow position:
               
chrX:32743469-32743683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 202
               

               
Conread position:
               
327-550
               

               
Cow position:
               
chrX:2786624-2786397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
327-550
               

               
Cow position:
               
chrX:17042627-17042842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
327-553
               

               
Cow position:
               
chrX:19678332-19678112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
327-554
               

               
Cow position:
               
chrX:24259649-24259418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 179
               

               
Conread position:
               
327-555
               

               
Cow position:
               
chrX:24132216-24131988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
327-571
               

               
Cow position:
               
chrX:25419223-25418971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
327-582
               

               
Cow position:
               
chrX:31340643-31340902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
327-586
               

               
Cow position:
               
chrX:11746781-11747026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
229, 63
               

               
Conread position:
               
327-586
               

               
Cow position:
               
chrX:29761755-29761488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
327-587
               

               
Cow position:
               
chrX:15329580-15329839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chrX:27771641-27771380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 173
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chrX:5046963-5046715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chrX:7425403-7425664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chrX:9539258-9539518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 202
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chrX:9839162-9839420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chrX:10302272-10302536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
327-589
               

               
Cow position:
               
chrX:18456334-18456599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 176
               

               
Conread position:
               
327-594
               

               
Cow position:
               
chrX:25388298-25388047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
262, 28
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:6563455-6563723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 233
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:19878978-19879242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 64
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:21664788-21664519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 229
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:23667058-23667321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:25338118-25338390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 242
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:32431555-32431825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 231
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:41083859-41084122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
327-595
               

               
Cow position:
               
chrX:48248762-48249026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
327-596
               

               
Cow position:
               
chrX:6041278-6041008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 233
               

               
Conread position:
               
327-614
               

               
Cow position:
               
chrX:40789143-40789428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 149
               

               
Conread position:
               
328-506
               

               
Cow position:
               
chrX:16348633-16348455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
328-506
               

               
Cow position:
               
chrX:38936632-38936816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chrX:151840-152021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
153, 41
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chrX:8797188-8797370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chrX:13382265-13382446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
154, 65
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chrX:15147252-15147076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
328-515
               

               
Cow position:
               
chrX:11633615-11633808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
328-520
               

               
Cow position:
               
chrX:18694989-18694801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
154, 39
               

               
Conread position:
               
328-521
               

               
Cow position:
               
chrX:1499602-1499797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chrX:917430-917234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 63
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chrX:29549612-29549417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
151, 160
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chrX:36514959-36514758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
328-525
               

               
Cow position:
               
chrX:31515104-31515309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
328-530
               

               
Cow position:
               
chrX:2003941-2003738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chrX:5900404-5900603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
154, 64
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chrX:29601895-29601687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 188
               

               
Conread position:
               
328-531
               

               
Cow position:
               
chrX:41027091-41027300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
66, 185
               

               
Conread position:
               
328-532
               

               
Cow position:
               
chrX:29032345-29032550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 182
               

               
Conread position:
               
328-532
               

               
Cow position:
               
chrX:41068656-41068867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 190
               

               
Conread position:
               
328-547
               

               
Cow position:
               
chrX:5017479-5017267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 121
               

               
Conread position:
               
328-547
               

               
Cow position:
               
chrX:29680325-29680104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
328-547
               

               
Cow position:
               
chrX:41878997-41878776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
328-547
               

               
Cow position:
               
chrX:42247251-42247024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
328-551
               

               
Cow position:
               
chrX:23514080-23513862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
328-554
               

               
Cow position:
               
chrX:17888483-17888258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
154, 19
               

               
Conread position:
               
328-558
               

               
Cow position:
               
chrX:22387307-22387085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
155, 63
               

               
Conread position:
               
328-586
               

               
Cow position:
               
chrX:1616109-1615842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 222
               

               
Conread position:
               
328-587
               

               
Cow position:
               
chrX:29120981-29121238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
328-589
               

               
Cow position:
               
chrX:1503273-1503526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
328-589
               

               
Cow position:
               
chrX:15049428-15049681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
328-594
               

               
Cow position:
               
chrX:5679630-5679372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
328-595
               

               
Cow position:
               
chrX:8925636-8925906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
121, 58
               

               
Conread position:
               
328-595
               

               
Cow position:
               
chrX:11614635-11614901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
154, 71
               

               
Conread position:
               
328-595
               

               
Cow position:
               
chrX:38964039-38964323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
329-472
               

               
Cow position:
               
chrX:27450062-27449917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
329-503
               

               
Cow position:
               
chrX:21566340-21566520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chrX:17635080-17635255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chrX:29289515-29289701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
329-518
               

               
Cow position:
               
chrX:25441058-25440875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
118, 54
               

               
Conread position:
               
329-518
               

               
Cow position:
               
chrX:28111443-28111637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
329-521
               

               
Cow position:
               
chrX:42235592-42235393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 189
               

               
Conread position:
               
329-531
               

               
Cow position:
               
chrX:33639909-33640116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
119, 187
               

               
Conread position:
               
329-545
               

               
Cow position:
               
chrX:26493700-26493492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chrX:17964582-17964327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
112, 57
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chrX:20882001-20881742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
178, 23
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chrX:40692817-40692553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 197
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chrX:42011215-42011480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
329-595
               

               
Cow position:
               
chrX:10959461-10959190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
330-510
               

               
Cow position:
               
chrX:11313846-11313665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 145
               

               
Conread position:
               
330-510
               

               
Cow position:
               
chrX:34565218-34565405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 145
               

               
Conread position:
               
330-524
               

               
Cow position:
               
chrX:38094584-38094386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 185
               

               
Conread position:
               
330-524
               

               
Cow position:
               
chrX:46072883-46072683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chrX:2300860-2301087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
330-569
               

               
Cow position:
               
chrX:17630869-17630622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
330-569
               

               
Cow position:
               
chrX:39126269-39126505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chrX:7497177-7497430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chrX:18142516-18142263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chrX:33803069-33802811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chrX:36009975-36009719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
330-588
               

               
Cow position:
               
chrX:6674981-6674717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
330-588
               

               
Cow position:
               
chrX:17662656-17662403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
330-588
               

               
Cow position:
               
chrX:26619170-26618920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
233, 57
               

               
Conread position:
               
330-590
               

               
Cow position:
               
chrX:43426229-43426490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
330-595
               

               
Cow position:
               
chrX:11073255-11072994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
331-504
               

               
Cow position:
               
chrX:42500440-42500597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
331-521
               

               
Cow position:
               
chrX:30133382-30133188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 39
               

               
Conread position:
               
331-530
               

               
Cow position:
               
chrX:29050185-29050386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 183
               

               
Conread position:
               
331-536
               

               
Cow position:
               
chrX:11562094-11562292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
331-539
               

               
Cow position:
               
chrX:38654494-38654293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 120
               

               
Conread position:
               
331-547
               

               
Cow position:
               
chrX:31252356-31252565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
331-550
               

               
Cow position:
               
chrX:1978449-1978667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
331-582
               

               
Cow position:
               
chrX:27176374-27176121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
331-585
               

               
Cow position:
               
chrX:28929775-28930030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
57, 94
               

               
Conread position:
               
331-587
               

               
Cow position:
               
chrX:22326057-22326311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 224
               

               
Conread position:
               
331-587
               

               
Cow position:
               
chrX:27287795-27287542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
331-595
               

               
Cow position:
               
chrX:20584262-20584538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
332-451
               

               
Cow position:
               
chrX:39701162-39701281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
332-554
               

               
Cow position:
               
chrX:47744028-47744251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
332-589
               

               
Cow position:
               
chrX:32310042-32310301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
62, 27
               

               
Conread position:
               
332-589
               

               
Cow position:
               
chrX:39415429-39415171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
332-593
               

               
Cow position:
               
chrX:14973801-14973533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
332-594
               

               
Cow position:
               
chrX:630369-630106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
332-595
               

               
Cow position:
               
chrX:6633017-6633271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
257, 144
               

               
Conread position:
               
332-603
               

               
Cow position:
               
chrX:20376907-20377177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
333-515
               

               
Cow position:
               
chrX:32978137-32977960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
333-587
               

               
Cow position:
               
chrX:16514324-16514078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
333-595
               

               
Cow position:
               
chrX:6203485-6203747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
333-595
               

               
Cow position:
               
chrX:34470672-34470916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
333-603
               

               
Cow position:
               
chrX:37760825-37761082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
334-595
               

               
Cow position:
               
chrX:41560313-41560070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
335-449
               

               
Cow position:
               
chrX:30862255-30862370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
335-503
               

               
Cow position:
               
chrX:3154301-3154130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
335-504
               

               
Cow position:
               
chrX:13205334-13205501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
335-589
               

               
Cow position:
               
chrX:20791876-20791621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 223
               

               
Conread position:
               
336-531
               

               
Cow position:
               
chrX:31627038-31626837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
336-589
               

               
Cow position:
               
chrX:19930594-19930842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
337-511
               

               
Cow position:
               
chrX:4043916-4043745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
337-588
               

               
Cow position:
               
chrX:8917786-8918031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 176
               

               
Conread position:
               
337-588
               

               
Cow position:
               
chrX:23414428-23414178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 164
               

               
Conread position:
               
337-595
               

               
Cow position:
               
chrX:17541902-17542167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
115, 163
               

               
Conread position:
               
338-514
               

               
Cow position:
               
chrX:44339379-44339202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 172
               

               
Conread position:
               
341-586
               

               
Cow position:
               
chrX:15233319-15233072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 47
               

               
Conread position:
               
341-586
               

               
Cow position:
               
chrX:29408077-29407828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
55, 217
               

               
Conread position:
               
343-589
               

               
Cow position:
               
chrX:46083922-46084171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
345-555
               

               
Cow position:
               
chrX:7806377-7806589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
345-589
               

               
Cow position:
               
chrX:34356015-34355777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
347-514
               

               
Cow position:
               
chrX:35268822-35268984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
351-521
               

               
Cow position:
               
chrX:9041287-9041113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
353-458
               

               
Cow position:
               
chrX:6682682-6682787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
353-587
               

               
Cow position:
               
chrX:41733247-41733006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
354-581
               

               
Cow position:
               
chrX:35759978-35759745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
355-589
               

               
Cow position:
               
chrX:15305340-15305097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
356-597
               

               
Cow position:
               
chrX:31602619-31602858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
97, 200
               

               
Conread position:
               
357-588
               

               
Cow position:
               
chrX:48089441-48089206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
358-575
               

               
Cow position:
               
chrX:21640390-21640612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 173
               

               
Conread position:
               
360-517
               

               
Cow position:
               
chrX:20011373-20011535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
363-472
               

               
Cow position:
               
chrX:46612746-46612633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
374-595
               

               
Cow position:
               
chrX:3161051-3160843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
378-589
               

               
Cow position:
               
chrX:23179290-23179083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
379-581
               

               
Cow position:
               
chrX:48428488-48428704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
381-555
               

               
Cow position:
               
chrX:43980726-43980901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
387-595
               

               
Cow position:
               
chrX:30980142-30979930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
392-588
               

               
Cow position:
               
chrX:29874373-29874174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
54, 124
               

               
Conread position:
               
393-593
               

               
Cow position:
               
chrX:8780042-8780247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
59, 139
               

               
Conread position:
               
395-592
               

               
Cow position:
               
chrX:27276694-27276899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
399-511
               

               
Cow position:
               
chrX:30744986-30745098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 75
               

               
Conread position:
               
399-555
               

               
Cow position:
               
chrX:16419155-16419311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
399-573
               

               
Cow position:
               
chrX:159751-159576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
404-548
               

               
Cow position:
               
chrX:4446719-4446862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
407-582
               

               
Cow position:
               
chrX:12304573-12304752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 145
               

               
Conread position:
               
407-587
               

               
Cow position:
               
chrX:46700835-46700653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 168
               

               
Conread position:
               
416-595
               

               
Cow position:
               
chrX:33585524-33585694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
173, 33
               

               
Conread position:
               
417-592
               

               
Cow position:
               
chrX:2648185-2648015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
424-589
               

               
Cow position:
               
chrX:16291990-16291819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
428-594
               

               
Cow position:
               
chrX:29675533-29675704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
428-595
               

               
Cow position:
               
chrX:18417267-18417099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
156, 135
               

               
Conread position:
               
429-595
               

               
Cow position:
               
chrX:6676860-6677032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
431-588
               

               
Cow position:
               
chrX:488718-488873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
432-578
               

               
Cow position:
               
chrX:10289589-10289442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
436-553
               

               
Cow position:
               
chrX:3951086-3951203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
437-589
               

               
Cow position:
               
chrX:30483962-30483811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
438-555
               

               
Cow position:
               
chrX:24747135-24747021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
438-589
               

               
Cow position:
               
chrX:17952928-17952777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
438-589
               

               
Cow position:
               
chrX:46028714-46028563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
446-594
               

               
Cow position:
               
chrX:8103233-8103090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
452-589
               

               
Cow position:
               
chrX:31273264-31273401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
453-589
               

               
Cow position:
               
chrX:4545290-4545157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               
Show alignments to all cow chromosomes.