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Cow genome map

           
Conread name:
           
Emb1-C0005217_F24
        

               
Conread position:
               
3-298
               

               
Cow position:
               
chr1:26812104-26811811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
151, 96
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr1:76618505-76618213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
151, 96
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr1:101010947-101010654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 94
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr1:31392325-31392032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
151, 93
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr1:81357674-81357394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
9-299
               

               
Cow position:
               
chr1:31351792-31351504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
145, 91
               

               
Conread position:
               
9-524
               

               
Cow position:
               
chr1:7837775-7837247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 71
               

               
Conread position:
               
13-297
               

               
Cow position:
               
chr1:56631367-56631640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
139, 88
               

               
Conread position:
               
13-298
               

               
Cow position:
               
chr1:32564949-32564670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
150, 76
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr1:23969829-23969656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
14-250
               

               
Cow position:
               
chr1:27113174-27112950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
206, 83
               

               
Conread position:
               
14-257
               

               
Cow position:
               
chr1:11666583-11666348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-290
               

               
Cow position:
               
chr1:92035077-92035344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-294
               

               
Cow position:
               
chr1:39889118-39889396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr1:19236518-19236238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr1:47454998-47454718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr1:79633573-79633293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chr1:11771810-11771530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
140, 83
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chr1:30103598-30103325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
140, 86
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chr1:51393072-51393341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
139, 84
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chr1:53311209-53311490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chr1:63045864-63046145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:8602991-8602715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:8828000-8828282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:25552786-25553066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:26607586-26607304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:28520630-28520912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:28876071-28876358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
140, 110
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:29037521-29037801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:30078922-30079202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:31106414-31106132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
140, 83
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:53371337-53371619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
138, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:56726148-56726426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:57526255-57526537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:65389538-65389820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:68818923-68818648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:72986437-72986719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:73064356-73064074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
149, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:85777480-85777198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr1:94662633-94662914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 66
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:8471180-8470900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 78
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:9377510-9377217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:12803062-12803354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:13438100-13438383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:15149664-15149381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:17436695-17436413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:18087408-18087691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:19161948-19162230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:20527139-20527422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:20831861-20832144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:20847034-20846751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:26587930-26588212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:28714018-28714301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:29365387-29365668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
209, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:31534831-31535114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:32961521-32961241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:33040053-33039770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:34684477-34684748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:40058084-40058367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:48249694-48249977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:48811214-48810932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:55145024-55145307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:56205831-56205548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:57970611-57970335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 34
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:60251447-60251164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:61203363-61203646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:61340341-61340058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:61563016-61563299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:61748464-61748188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
206, 42
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:62927448-62927731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:63341493-63341210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:68846722-68846448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
207, 66
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:71559765-71559482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:71794512-71794795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:73565499-73565216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:76878011-76878294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
140, 82
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:77747725-77748005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 57
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:78587479-78587196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:78922034-78921751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:79553474-79553758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:82478964-82479245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
103, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:82909850-82909569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:86545158-86544875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:87722708-87722425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:89090557-89090275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:89431382-89431665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:91105021-91105304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:91673211-91673494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr1:99108248-99107965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 84
               

               
Conread position:
               
14-473
               

               
Cow position:
               
chr1:52864294-52863827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 37
               

               
Conread position:
               
14-517
               

               
Cow position:
               
chr1:79255012-79255493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 49
               

               
Conread position:
               
14-523
               

               
Cow position:
               
chr1:89484095-89484606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
14-523
               

               
Cow position:
               
chr1:102322121-102321604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
14-524
               

               
Cow position:
               
chr1:9261491-9262012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 81
               

               
Conread position:
               
14-524
               

               
Cow position:
               
chr1:58197467-58196938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 34
               

               
Conread position:
               
14-524
               

               
Cow position:
               
chr1:63045170-63044642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
14-524
               

               
Cow position:
               
chr1:102551991-102552519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 100
               

               
Conread position:
               
14-525
               

               
Cow position:
               
chr1:21134128-21133615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 100
               

               
Conread position:
               
15-270
               

               
Cow position:
               
chr1:93112392-93112136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
139, 85
               

               
Conread position:
               
15-298
               

               
Cow position:
               
chr1:56141373-56141092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
139, 99
               

               
Conread position:
               
15-524
               

               
Cow position:
               
chr1:72139194-72139711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
16-294
               

               
Cow position:
               
chr1:3743264-3742989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr1:11018425-11018697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
138, 36
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr1:29461309-29461592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr1:53396698-53396967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
205, 56
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr1:70381566-70381284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr1:82369408-82369682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
16-317
               

               
Cow position:
               
chr1:23578823-23578533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
16-522
               

               
Cow position:
               
chr1:92279811-92279303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr1:11199648-11199369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 81
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr1:38478288-38478566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 81
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr1:42739390-42739668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
18-299
               

               
Cow position:
               
chr1:84446663-84446941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 67
               

               
Conread position:
               
18-299
               

               
Cow position:
               
chr1:86593321-86593042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
20-299
               

               
Cow position:
               
chr1:99572578-99572304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
21-299
               

               
Cow position:
               
chr1:69504388-69504112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
133, 93
               

               
Conread position:
               
23-296
               

               
Cow position:
               
chr1:22012973-22012701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
150, 72
               

               
Conread position:
               
23-298
               

               
Cow position:
               
chr1:20002009-20001733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
131, 29
               

               
Conread position:
               
26-298
               

               
Cow position:
               
chr1:3383326-3383056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
29-299
               

               
Cow position:
               
chr1:19776097-19775829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
125, 85
               

               
Conread position:
               
31-299
               

               
Cow position:
               
chr1:3339662-3339928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
33-297
               

               
Cow position:
               
chr1:7324069-7324331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
34-298
               

               
Cow position:
               
chr1:30532020-30531759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
34-298
               

               
Cow position:
               
chr1:33548395-33548140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
34-299
               

               
Cow position:
               
chr1:55274043-55273780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
34-524
               

               
Cow position:
               
chr1:13251517-13251029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
35-299
               

               
Cow position:
               
chr1:3970264-3970002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
36-299
               

               
Cow position:
               
chr1:35598809-35598548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
40-299
               

               
Cow position:
               
chr1:52067632-52067889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
114, 74
               

               
Conread position:
               
48-299
               

               
Cow position:
               
chr1:26537173-26536924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 64
               

               
Conread position:
               
49-299
               

               
Cow position:
               
chr1:42888463-42888220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
52-298
               

               
Cow position:
               
chr1:98354378-98354134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
53-299
               

               
Cow position:
               
chr1:80565059-80564815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
56-298
               

               
Cow position:
               
chr1:88389349-88389589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
63-299
               

               
Cow position:
               
chr1:83169469-83169704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
65-299
               

               
Cow position:
               
chr1:22778854-22778624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
65-522
               

               
Cow position:
               
chr1:85337907-85338375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
68-298
               

               
Cow position:
               
chr1:101833419-101833658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
85-298
               

               
Cow position:
               
chr1:57574547-57574325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
85-299
               

               
Cow position:
               
chr1:20543265-20543489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
88-444
               

               
Cow position:
               
chr1:21785530-21785914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
97-299
               

               
Cow position:
               
chr1:58440242-58440036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
104-298
               

               
Cow position:
               
chr1:16838376-16838578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
107-290
               

               
Cow position:
               
chr1:22252752-22252942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
107-297
               

               
Cow position:
               
chr1:26446222-26446414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
107-299
               

               
Cow position:
               
chr1:53649713-53649914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
108-299
               

               
Cow position:
               
chr1:475241-475439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
108-299
               

               
Cow position:
               
chr1:89793016-89793215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
109-299
               

               
Cow position:
               
chr1:55494000-55493802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
109-424
               

               
Cow position:
               
chr1:72307255-72306915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
109-524
               

               
Cow position:
               
chr1:57679292-57678863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 191
               

               
Conread position:
               
111-297
               

               
Cow position:
               
chr1:19146101-19145909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 144
               

               
Conread position:
               
117-299
               

               
Cow position:
               
chr1:52053893-52054082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
118-299
               

               
Cow position:
               
chr1:31498195-31498382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
142, 38
               

               
Conread position:
               
119-295
               

               
Cow position:
               
chr1:54296069-54295885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
119-448
               

               
Cow position:
               
chr1:22226718-22227058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 315
               

               
Conread position:
               
120-517
               

               
Cow position:
               
chr1:51967333-51967755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
124-299
               

               
Cow position:
               
chr1:58356654-58356471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
131-299
               

               
Cow position:
               
chr1:70038155-70037979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
181-524
               

               
Cow position:
               
chr1:43449364-43448994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
43, 294
               

               
Conread position:
               
204-525
               

               
Cow position:
               
chr1:30281630-30281308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
301-522
               

               
Cow position:
               
chr1:90622940-90622720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 146
               

               
Conread position:
               
301-524
               

               
Cow position:
               
chr1:51444527-51444760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
305-524
               

               
Cow position:
               
chr1:50764442-50764663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
337-522
               

               
Cow position:
               
chr1:99572241-99572056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
337-524
               

               
Cow position:
               
chr1:12057925-12057736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:14240741-14240551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:25553130-25553319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:52355346-52355156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:57571158-57571348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:57759239-57759425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:67078501-67078311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:76618148-76617959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:76749066-76748876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:78290884-78291073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:90913155-90913345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:94662979-94663169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:97076175-97075985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:99582133-99581940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chr1:100591447-100591257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
339-524
               

               
Cow position:
               
chr1:55159056-55158867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 135
               

               
Conread position:
               
340-524
               

               
Cow position:
               
chr1:38545388-38545205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
341-524
               

               
Cow position:
               
chr1:4337095-4337281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
341-525
               

               
Cow position:
               
chr1:20098430-20098611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
343-524
               

               
Cow position:
               
chr1:53371699-53371885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
345-524
               

               
Cow position:
               
chr1:62507910-62507729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
348-524
               

               
Cow position:
               
chr1:101008523-101008343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 134
               

               
Conread position:
               
349-523
               

               
Cow position:
               
chr1:73018133-73017955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
367-524
               

               
Cow position:
               
chr1:77461494-77461649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
123, 40
               
Show alignments to all cow chromosomes.