Cow genome map

Conread name: Emb1-C0005217_F24

Conread position: 3-295
Cow position: chr13:41337963-41337673 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 156, 95

Conread position: 3-298
Cow position: chr13:34870665-34870959 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 96

Conread position: 3-299
Cow position: chr13:38611930-38612224 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 151, 95

Conread position: 3-448
Cow position: chr13:34763286-34762819 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 316
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 10

Conread position: 9-298
Cow position: chr13:3657638-3657351 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 145, 89

Conread position: 13-298
Cow position: chr13:16249229-16248943 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 77

Conread position: 14-289
Cow position: chr13:54107172-54106906 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 136, 82

Conread position: 14-294
Cow position: chr13:50112183-50112454 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 140, 85

Conread position: 14-297
Cow position: chr13:14303266-14302988 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 140, 85

Conread position: 14-297
Cow position: chr13:31614226-31613949 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 217, 34

Conread position: 14-298
Cow position: chr13:3556129-3556411 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 140, 85

Conread position: 14-298
Cow position: chr13:9571287-9571010 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 14, 88

Conread position: 14-298
Cow position: chr13:11795983-11795698 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 118, 83

Conread position: 14-298
Cow position: chr13:14411454-14411172 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 140, 84

Conread position: 14-298
Cow position: chr13:15921740-15921458 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 140, 85

Conread position: 14-298
Cow position: chr13:18330408-18330126 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 140, 85

Conread position: 14-298
Cow position: chr13:19637870-19638152 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 140, 85

Conread position: 14-298
Cow position: chr13:20538828-20538545 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 133, 83

Conread position: 14-298
Cow position: chr13:30794995-30794716 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 138, 62

Conread position: 14-298
Cow position: chr13:31509864-31510143 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 161, 85

Conread position: 14-298
Cow position: chr13:32734469-32734188 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 140, 85

Conread position: 14-298
Cow position: chr13:32955743-32955462 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 140, 81

Conread position: 14-298
Cow position: chr13:32982684-32982403 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 140, 81

Conread position: 14-298
Cow position: chr13:36936449-36936730 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 135, 84

Conread position: 14-298
Cow position: chr13:52279535-52279813 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 43

Conread position: 14-299
Cow position: chr13:143402-143119 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 140, 85

Conread position: 14-299
Cow position: chr13:561667-561386 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 140, 85

Conread position: 14-299
Cow position: chr13:2138461-2138178 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 84

Conread position: 14-299
Cow position: chr13:3021768-3021485 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 140, 84

Conread position: 14-299
Cow position: chr13:6360584-6360866 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 140, 85

Conread position: 14-299
Cow position: chr13:8068485-8068202 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 140, 84

Conread position: 14-299
Cow position: chr13:11389975-11390258 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 140, 100

Conread position: 14-299
Cow position: chr13:16807314-16807597 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 140, 85

Conread position: 14-299
Cow position: chr13:18122153-18121870 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 140, 85

Conread position: 14-299
Cow position: chr13:21837580-21837297 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 140, 84

Conread position: 14-299
Cow position: chr13:21906196-21905918 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 206, 40

Conread position: 14-299
Cow position: chr13:29055711-29055428 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 140, 100

Conread position: 14-299
Cow position: chr13:33523237-33522958 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 140, 32

Conread position: 14-299
Cow position: chr13:34051347-34051622 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 140, 39

Conread position: 14-299
Cow position: chr13:44324246-44323961 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 84

Conread position: 14-299
Cow position: chr13:53051553-53051836 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 140, 100

Conread position: 14-299
Cow position: chr13:53157672-53157389 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 140, 85

Conread position: 14-299
Cow position: chr13:58313049-58313332 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 140, 84

Conread position: 14-299
Cow position: chr13:60646868-60646586 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 140, 57

Conread position: 14-523
Cow position: chr13:47357856-47357345 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 38

Conread position: 14-524
Cow position: chr13:3314345-3314877 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 87

Conread position: 14-525
Cow position: chr13:32774628-32774097 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 84

Conread position: 15-299
Cow position: chr13:17495805-17496083 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 143, 83

Conread position: 16-295
Cow position: chr13:22907550-22907273 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 83

Conread position: 16-298
Cow position: chr13:7608866-7609144 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 138, 60

Conread position: 17-446
Cow position: chr13:53575350-53574906 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 81

Conread position: 18-298
Cow position: chr13:1591433-1591157 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 145, 18

Conread position: 18-524
Cow position: chr13:9300892-9301411 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 358
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 205, 83

Conread position: 19-298
Cow position: chr13:13902579-13902855 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 135, 80

Conread position: 19-299
Cow position: chr13:45933473-45933751 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 135, 95

Conread position: 23-524
Cow position: chr13:11254938-11254408 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 122

Conread position: 34-299
Cow position: chr13:19843216-19843470 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 185, 29

Conread position: 35-299
Cow position: chr13:2805543-2805282 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 119, 33

Conread position: 36-298
Cow position: chr13:43975210-43974952 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 118, 17

Conread position: 42-298
Cow position: chr13:34345049-34345303 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 112, 57

Conread position: 45-299
Cow position: chr13:46598546-46598294 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 29, 57

Conread position: 52-297
Cow position: chr13:47577349-47577590 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 102, 46

Conread position: 52-299
Cow position: chr13:8781663-8781908 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 47

Conread position: 81-297
Cow position: chr13:25694269-25694497 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 92-299
Cow position: chr13:11826967-11826752 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 62, 200

Conread position: 98-294
Cow position: chr13:644728-644925 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 184

Conread position: 105-299
Cow position: chr13:19261487-19261285 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 107-294
Cow position: chr13:22714700-22714896 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 107-297
Cow position: chr13:46055743-46055940 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 75

Conread position: 108-299
Cow position: chr13:504135-504334 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 108-299
Cow position: chr13:838606-838407 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 108-299
Cow position: chr13:18097821-18097622 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 108-299
Cow position: chr13:19102872-19102673 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 108-299
Cow position: chr13:55337544-55337743 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 117-298
Cow position: chr13:47006510-47006692 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 49

Conread position: 123-524
Cow position: chr13:20778641-20778217 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 280
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 99, 15

Conread position: 130-297
Cow position: chr13:45072188-45072363 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 136-299
Cow position: chr13:38013821-38013654 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 137-521
Cow position: chr13:26823288-26822879 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 288
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 24

Conread position: 301-522
Cow position: chr13:54863975-54864196 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 171, 75

Conread position: 301-524
Cow position: chr13:21905890-21905658 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 183

Conread position: 305-523
Cow position: chr13:34190271-34190496 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 14, 96

Conread position: 305-524
Cow position: chr13:16345120-16344893 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 19, 115

Conread position: 337-523
Cow position: chr13:24059391-24059580 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 39, 10

Conread position: 338-524
Cow position: chr13:9537305-9537495 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 141

Conread position: 338-524
Cow position: chr13:15280351-15280540 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 38, 141

Conread position: 338-524
Cow position: chr13:15921396-15921206 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 38, 141

Conread position: 338-524
Cow position: chr13:48627615-48627801 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 103

Conread position: 352-524
Cow position: chr13:35540482-35540655 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 127

Conread position: 357-524
Cow position: chr13:54238365-54238194 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 63

Show alignments to all cow chromosomes.