Cow genome map
| Conread name: | Emb1-C0005217_F24 |
| Conread position: | 3-298 |
| Cow position: | chr17:15117609-15117902 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 151, 95 |
| Conread position: | 3-299 |
| Cow position: | chr17:29825169-29824875 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 151, 96 |
| Conread position: | 3-523 |
| Cow position: | chr17:33290168-33289643 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 95 |
| Conread position: | 14-258 |
| Cow position: | chr17:1564987-1565219 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-288 |
| Cow position: | chr17:18722075-18721803 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 138, 85 |
| Conread position: | 14-294 |
| Cow position: | chr17:6122586-6122864 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-294 |
| Cow position: | chr17:22249448-22249178 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-294 |
| Cow position: | chr17:38917225-38916954 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-296 |
| Cow position: | chr17:4481079-4480799 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 140, 83 |
| Conread position: | 14-297 |
| Cow position: | chr17:8204739-8205030 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 95, 64 |
| Conread position: | 14-297 |
| Cow position: | chr17:23321617-23321332 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-297 |
| Cow position: | chr17:33935034-33934756 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-298 |
| Cow position: | chr17:1569413-1569129 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr17:6262660-6262941 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 81 |
| Conread position: | 14-298 |
| Cow position: | chr17:8222498-8222790 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 151 |
| Conread position: | 14-298 |
| Cow position: | chr17:14239872-14240154 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-298 |
| Cow position: | chr17:20545941-20546222 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 14-298 |
| Cow position: | chr17:24027180-24026898 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 149, 85 |
| Conread position: | 14-299 |
| Cow position: | chr17:1654958-1654676 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 138, 42 |
| Conread position: | 14-299 |
| Cow position: | chr17:1969954-1970237 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 86 |
| Conread position: | 14-299 |
| Cow position: | chr17:15140535-15140253 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr17:15325432-15325150 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr17:15709190-15708907 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr17:21770483-21770766 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr17:27791970-27791696 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 140, 81 |
| Conread position: | 14-299 |
| Cow position: | chr17:30182777-30182494 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr17:44641667-44641384 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-374 |
| Cow position: | chr17:2033007-2033374 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 28 |
| Conread position: | 14-460 |
| Cow position: | chr17:1712094-1711652 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 140, 64 |
| Conread position: | 14-524 |
| Cow position: | chr17:1708926-1708417 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 64 |
| Conread position: | 14-524 |
| Cow position: | chr17:2838836-2839358 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-524 |
| Cow position: | chr17:29156186-29156713 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 65 |
| Conread position: | 15-298 |
| Cow position: | chr17:37529168-37528887 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 17-298 |
| Cow position: | chr17:15229226-15228950 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 135, 82 |
| Conread position: | 17-299 |
| Cow position: | chr17:2269616-2269892 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 135, 25 |
| Conread position: | 18-294 |
| Cow position: | chr17:11785691-11785958 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 136, 80 |
| Conread position: | 19-299 |
| Cow position: | chr17:2265003-2265275 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 135, 95 |
| Conread position: | 26-298 |
| Cow position: | chr17:26829924-26829659 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 35-513 |
| Cow position: | chr17:29212456-29212954 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 36-299 |
| Cow position: | chr17:24785015-24785276 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 37-257 |
| Cow position: | chr17:3780282-3780494 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 40-294 |
| Cow position: | chr17:43471761-43471517 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 40-299 |
| Cow position: | chr17:34236422-34236165 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 43-299 |
| Cow position: | chr17:6611845-6612108 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 89-299 |
| Cow position: | chr17:15438659-15438877 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 145 |
| Conread position: | 98-293 |
| Cow position: | chr17:14006302-14006500 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 184 |
| Conread position: | 100-299 |
| Cow position: | chr17:18591303-18591509 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 101-299 |
| Cow position: | chr17:5806609-5806403 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 101-299 |
| Cow position: | chr17:14865504-14865298 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 103-523 |
| Cow position: | chr17:16870385-16869958 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 139 |
| Conread position: | 104-523 |
| Cow position: | chr17:29079264-29079696 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 108-299 |
| Cow position: | chr17:5639002-5638803 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 108-299 |
| Cow position: | chr17:5672630-5672431 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 109-297 |
| Cow position: | chr17:18200626-18200821 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 109-299 |
| Cow position: | chr17:43231280-43231082 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 117-524 |
| Cow position: | chr17:16447582-16447142 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 37, 391 |
| Conread position: | 125-299 |
| Cow position: | chr17:14932963-14932781 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 133-299 |
| Cow position: | chr17:3305486-3305661 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 137-292 |
| Cow position: | chr17:11913937-11913778 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 284-523 |
| Cow position: | chr17:11913657-11913410 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 301-524 |
| Cow position: | chr17:36790178-36790406 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 305-522 |
| Cow position: | chr17:29471549-29471768 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 306-523 |
| Cow position: | chr17:29041788-29041564 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 321-524 |
| Cow position: | chr17:22563279-22563484 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 323-523 |
| Cow position: | chr17:18471306-18471517 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 323-524 |
| Cow position: | chr17:40801887-40802087 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 337-524 |
| Cow position: | chr17:18099925-18099734 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 337-524 |
| Cow position: | chr17:24026834-24026645 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 127 |
| Conread position: | 338-523 |
| Cow position: | chr17:6071690-6071880 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 338-523 |
| Cow position: | chr17:29950362-29950551 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr17:11083985-11083795 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr17:14242976-14243166 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 338-524 |
| Cow position: | chr17:18777680-18777492 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 338-524 |
| Cow position: | chr17:40810901-40811083 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 122 |
| Conread position: | 339-524 |
| Cow position: | chr17:6263007-6263194 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 339-524 |
| Cow position: | chr17:15853886-15854075 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 382-524 |
| Cow position: | chr17:15228634-15228488 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 402-524 |
| Cow position: | chr17:922837-922962 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.