Cow genome map
| Conread name: | Emb1-C0005217_F24 |
| Conread position: | 3-299 |
| Cow position: | chr18:37732705-37732998 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 151, 96 |
| Conread position: | 8-298 |
| Cow position: | chr18:43285283-43284997 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 146, 8 |
| Conread position: | 14-298 |
| Cow position: | chr18:14047297-14047560 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 140, 65 |
| Conread position: | 14-298 |
| Cow position: | chr18:25354544-25354825 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 138, 86 |
| Conread position: | 14-298 |
| Cow position: | chr18:28928563-28928287 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr18:29240113-29240395 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 138, 7 |
| Conread position: | 14-298 |
| Cow position: | chr18:29863578-29863296 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr18:32437075-32436793 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr18:32656597-32656879 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-298 |
| Cow position: | chr18:36511660-36511942 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr18:36776302-36776585 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 139, 83 |
| Conread position: | 14-298 |
| Cow position: | chr18:37583432-37583149 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-298 |
| Cow position: | chr18:38158515-38158234 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 140, 40 |
| Conread position: | 14-298 |
| Cow position: | chr18:40484022-40484308 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 14-298 |
| Cow position: | chr18:51484617-51484899 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 14-299 |
| Cow position: | chr18:603438-603155 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:5202515-5202798 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:9981646-9981929 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:11778368-11778648 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 171, 84 |
| Conread position: | 14-299 |
| Cow position: | chr18:11869513-11869796 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:15858195-15858473 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 206, 34 |
| Conread position: | 14-299 |
| Cow position: | chr18:16463843-16463557 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 14-299 |
| Cow position: | chr18:17335703-17335431 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 138, 32 |
| Conread position: | 14-299 |
| Cow position: | chr18:19355541-19355822 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr18:22182511-22182230 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 140, 75 |
| Conread position: | 14-299 |
| Cow position: | chr18:24037817-24037537 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 209, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:24211963-24212246 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:24413322-24413604 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:27994958-27994675 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:29071448-29071730 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 138, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:29074918-29075202 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:29798060-29797776 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 138, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:32164905-32164622 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:35444342-35444059 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr18:50093417-50093135 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 140, 34 |
| Conread position: | 14-299 |
| Cow position: | chr18:51459815-51459532 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr18:51602639-51602356 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr18:52630231-52629949 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-489 |
| Cow position: | chr18:51273078-51272611 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 51 |
| Conread position: | 14-522 |
| Cow position: | chr18:32246273-32245762 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-524 |
| Cow position: | chr18:19310193-19310715 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-524 |
| Cow position: | chr18:25923412-25923934 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-524 |
| Cow position: | chr18:36122810-36122298 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 60 |
| Conread position: | 15-299 |
| Cow position: | chr18:24619456-24619738 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 15-523 |
| Cow position: | chr18:13509023-13508506 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 16-228 |
| Cow position: | chr18:39273714-39273918 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 204, 81 |
| Conread position: | 16-517 |
| Cow position: | chr18:28930376-28929883 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 17-299 |
| Cow position: | chr18:22791385-22791114 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 17-517 |
| Cow position: | chr18:16472143-16471639 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 49 |
| Conread position: | 18-298 |
| Cow position: | chr18:21811010-21811288 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 137, 81 |
| Conread position: | 18-298 |
| Cow position: | chr18:37508999-37509276 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 96 |
| Conread position: | 18-525 |
| Cow position: | chr18:52574146-52574665 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 81 |
| Conread position: | 23-294 |
| Cow position: | chr18:41237565-41237843 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 138, 92 |
| Conread position: | 26-298 |
| Cow position: | chr18:54066025-54065765 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 128, 69 |
| Conread position: | 34-517 |
| Cow position: | chr18:15171908-15172403 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 64 |
| Conread position: | 40-299 |
| Cow position: | chr18:13269962-13270219 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 56-299 |
| Cow position: | chr18:23688240-23688481 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 60-299 |
| Cow position: | chr18:2853718-2853486 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 63-299 |
| Cow position: | chr18:50835312-50835076 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 88-297 |
| Cow position: | chr18:42080934-42080709 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 89-524 |
| Cow position: | chr18:89260-89715 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 90-297 |
| Cow position: | chr18:32859932-32859715 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 107-299 |
| Cow position: | chr18:36457368-36457567 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 108-298 |
| Cow position: | chr18:51653710-51653907 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 118-299 |
| Cow position: | chr18:30606816-30607005 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 124-298 |
| Cow position: | chr18:18215890-18215705 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 124-299 |
| Cow position: | chr18:26243332-26243149 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 300-523 |
| Cow position: | chr18:16025328-16025095 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 301-524 |
| Cow position: | chr18:30844573-30844343 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 336-523 |
| Cow position: | chr18:1062346-1062154 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 338-523 |
| Cow position: | chr18:16173240-16173051 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr18:5536345-5536536 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 338-524 |
| Cow position: | chr18:16094258-16094448 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 338-524 |
| Cow position: | chr18:29863231-29863041 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr18:36512007-36512194 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 338-524 |
| Cow position: | chr18:51484962-51485150 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 338-525 |
| Cow position: | chr18:4949535-4949722 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 141, 35 |
| Conread position: | 340-524 |
| Cow position: | chr18:37509337-37509525 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 139 |
| Conread position: | 352-525 |
| Cow position: | chr18:13270297-13270474 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 383-524 |
| Cow position: | chr18:31564052-31563910 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 110, 67 |
Show alignments to all cow chromosomes.