Cow genome map
| Conread name: | Emb1-C0005217_F24 |
| Conread position: | 3-298 |
| Cow position: | chr19:33624608-33624886 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 3-306 |
| Cow position: | chr19:6554999-6555293 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 3-521 |
| Cow position: | chr19:45464167-45464699 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 8-299 |
| Cow position: | chr19:7472089-7472375 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 46 |
| Conread position: | 12-299 |
| Cow position: | chr19:17883001-17883280 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 86 |
| Conread position: | 14-257 |
| Cow position: | chr19:40834239-40834005 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 206, 84 |
| Conread position: | 14-297 |
| Cow position: | chr19:29628806-29628541 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 62 |
| Conread position: | 14-298 |
| Cow position: | chr19:2270269-2269987 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-298 |
| Cow position: | chr19:7480902-7480620 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr19:10613260-10613542 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr19:29393374-29393656 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr19:30517835-30518118 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-298 |
| Cow position: | chr19:37844747-37844466 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 138, 81 |
| Conread position: | 14-298 |
| Cow position: | chr19:47189419-47189131 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 140, 39 |
| Conread position: | 14-299 |
| Cow position: | chr19:776546-776828 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 141, 84 |
| Conread position: | 14-299 |
| Cow position: | chr19:7345066-7345349 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr19:19388866-19389149 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr19:20611366-20611649 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr19:22512277-22512560 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr19:24734175-24734458 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr19:30037875-30037592 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr19:30474116-30473834 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 14-299 |
| Cow position: | chr19:33119692-33119409 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr19:33527879-33528162 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr19:33876448-33876731 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr19:35621555-35621843 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 14-299 |
| Cow position: | chr19:37653208-37653490 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 14-299 |
| Cow position: | chr19:43148614-43148896 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 140, 22 |
| Conread position: | 14-299 |
| Cow position: | chr19:48477606-48477884 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 138, 84 |
| Conread position: | 14-299 |
| Cow position: | chr19:55164621-55164342 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 32 |
| Conread position: | 14-299 |
| Cow position: | chr19:55377927-55378210 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-523 |
| Cow position: | chr19:39750256-39750727 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 35 |
| Conread position: | 14-524 |
| Cow position: | chr19:2588227-2588751 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 44 |
| Conread position: | 14-524 |
| Cow position: | chr19:28795287-28794762 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-525 |
| Cow position: | chr19:8206965-8206449 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-525 |
| Cow position: | chr19:30515995-30515472 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 15-254 |
| Cow position: | chr19:35611797-35611561 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 138, 83 |
| Conread position: | 16-259 |
| Cow position: | chr19:1663064-1663293 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 16-299 |
| Cow position: | chr19:55421078-55421361 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 138, 81 |
| Conread position: | 16-437 |
| Cow position: | chr19:29364428-29364840 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 136, 32 |
| Conread position: | 17-299 |
| Cow position: | chr19:14157066-14156788 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 81 |
| Conread position: | 18-297 |
| Cow position: | chr19:1293386-1293663 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 18-524 |
| Cow position: | chr19:15070347-15070859 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 81 |
| Conread position: | 21-298 |
| Cow position: | chr19:39340028-39339754 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 21-374 |
| Cow position: | chr19:3034077-3033721 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 39-250 |
| Cow position: | chr19:20662154-20661951 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 60-299 |
| Cow position: | chr19:48626137-48626374 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 73-298 |
| Cow position: | chr19:35381990-35381760 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 75-299 |
| Cow position: | chr19:20403376-20403599 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 85-523 |
| Cow position: | chr19:25085300-25085758 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 183 |
| Conread position: | 101-274 |
| Cow position: | chr19:27613679-27613501 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 7, 60 |
| Conread position: | 108-298 |
| Cow position: | chr19:40791240-40791042 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 108-299 |
| Cow position: | chr19:1564680-1564481 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 108-299 |
| Cow position: | chr19:31781687-31781886 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 108-299 |
| Cow position: | chr19:41205110-41204912 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 109-522 |
| Cow position: | chr19:42866591-42867032 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 394 |
| Conread position: | 111-297 |
| Cow position: | chr19:27082289-27082101 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 148 |
| Conread position: | 138-299 |
| Cow position: | chr19:42724812-42724981 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 152-299 |
| Cow position: | chr19:4447375-4447529 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 175-524 |
| Cow position: | chr19:46821039-46821420 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 190-467 |
| Cow position: | chr19:6743879-6744166 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 289-524 |
| Cow position: | chr19:29628371-29628121 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 301-525 |
| Cow position: | chr19:23488096-23488326 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 320-523 |
| Cow position: | chr19:42580953-42580757 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 152, 65 |
| Conread position: | 322-524 |
| Cow position: | chr19:30473775-30473576 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 168, 51 |
| Conread position: | 337-524 |
| Cow position: | chr19:207878-208064 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 148 |
| Conread position: | 338-523 |
| Cow position: | chr19:50833523-50833335 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 338-524 |
| Cow position: | chr19:435959-435767 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 143 |
| Conread position: | 338-524 |
| Cow position: | chr19:12652254-12652444 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr19:14180621-14180432 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 155, 140 |
| Conread position: | 338-524 |
| Cow position: | chr19:28596755-28596941 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr19:29366907-29367097 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr19:29624415-29624605 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr19:33876795-33876985 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr19:36351648-36351837 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 338-524 |
| Cow position: | chr19:40790977-40790789 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 338-524 |
| Cow position: | chr19:40849110-40848920 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 339-524 |
| Cow position: | chr19:33944946-33945135 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 343-524 |
| Cow position: | chr19:197400-197583 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 150, 30 |
| Conread position: | 352-524 |
| Cow position: | chr19:35781269-35781445 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 353-524 |
| Cow position: | chr19:20433844-20433674 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 74 |
Show alignments to all cow chromosomes.