Cow genome map
| Conread name: | Emb1-C0005217_F24 |
| Conread position: | 3-296 |
| Cow position: | chr25:17561752-17562042 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 3-299 |
| Cow position: | chr25:34509475-34509181 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 3-525 |
| Cow position: | chr25:17657329-17657872 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 372 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 10-297 |
| Cow position: | chr25:23326312-23326030 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 146, 7 |
| Conread position: | 10-299 |
| Cow position: | chr25:8875827-8875541 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 144, 7 |
| Conread position: | 14-219 |
| Cow position: | chr25:30341005-30340807 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 138, 39 |
| Conread position: | 14-285 |
| Cow position: | chr25:25109312-25109026 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 87 |
| Conread position: | 14-297 |
| Cow position: | chr25:26781367-26781086 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-298 |
| Cow position: | chr25:17586304-17586023 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-298 |
| Cow position: | chr25:20633482-20633758 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 140, 83 |
| Conread position: | 14-298 |
| Cow position: | chr25:24655454-24655172 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr25:35755528-35755246 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr25:3172684-3172401 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 84 |
| Conread position: | 14-299 |
| Cow position: | chr25:7223716-7223434 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr25:9395134-9395408 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 145, 39 |
| Conread position: | 14-299 |
| Cow position: | chr25:10634289-10634008 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 138, 88 |
| Conread position: | 14-299 |
| Cow position: | chr25:18190655-18190376 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 103, 57 |
| Conread position: | 14-299 |
| Cow position: | chr25:23773526-23773252 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 14-299 |
| Cow position: | chr25:24007623-24007906 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr25:25826169-25826446 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 138, 84 |
| Conread position: | 14-299 |
| Cow position: | chr25:27019522-27019239 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 14-299 |
| Cow position: | chr25:29526146-29525869 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr25:32577948-32577664 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 39, 66 |
| Conread position: | 14-299 |
| Cow position: | chr25:36350455-36350738 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-501 |
| Cow position: | chr25:450071-449579 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 80 |
| Conread position: | 14-521 |
| Cow position: | chr25:23999462-23998941 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 358 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 142, 84 |
| Conread position: | 14-524 |
| Cow position: | chr25:11043338-11043867 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 356 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 209, 40 |
| Conread position: | 14-524 |
| Cow position: | chr25:41120722-41121256 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 14-525 |
| Cow position: | chr25:392989-393514 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 14-525 |
| Cow position: | chr25:20772610-20772086 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 40 |
| Conread position: | 16-298 |
| Cow position: | chr25:28420981-28420708 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 138, 32 |
| Conread position: | 18-298 |
| Cow position: | chr25:21949518-21949795 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 18-298 |
| Cow position: | chr25:26354064-26353787 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 136, 12 |
| Conread position: | 21-299 |
| Cow position: | chr25:17904364-17904638 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 37 |
| Conread position: | 25-298 |
| Cow position: | chr25:11896344-11896615 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 89 |
| Conread position: | 34-298 |
| Cow position: | chr25:25509608-25509870 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 65 |
| Conread position: | 36-236 |
| Cow position: | chr25:23912771-23912962 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 38-393 |
| Cow position: | chr25:9958312-9957942 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 43-299 |
| Cow position: | chr25:26706138-26705884 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 43-299 |
| Cow position: | chr25:31073853-31073598 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 101-299 |
| Cow position: | chr25:40657319-40657523 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 107-297 |
| Cow position: | chr25:41135945-41135747 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 108-298 |
| Cow position: | chr25:18264995-18265194 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 109-299 |
| Cow position: | chr25:19139772-19139574 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 131-299 |
| Cow position: | chr25:35553492-35553668 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 301-522 |
| Cow position: | chr25:16922769-16922541 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 301-524 |
| Cow position: | chr25:7800044-7800269 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 321-522 |
| Cow position: | chr25:2516053-2516248 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 172, 55 |
| Conread position: | 335-524 |
| Cow position: | chr25:23325966-23325776 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 337-524 |
| Cow position: | chr25:24655113-24654922 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 338-523 |
| Cow position: | chr25:28275606-28275417 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr25:18886419-18886232 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 338-524 |
| Cow position: | chr25:28862934-28863124 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 338-524 |
| Cow position: | chr25:39386767-39386577 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 339-524 |
| Cow position: | chr25:22151168-22151357 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 351-524 |
| Cow position: | chr25:19923596-19923773 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 128 |
| Conread position: | 352-524 |
| Cow position: | chr25:17995214-17995042 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 357-524 |
| Cow position: | chr25:25826534-25826702 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 357-525 |
| Cow position: | chr25:10136894-10137067 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 398-524 |
| Cow position: | chr25:35613213-35613084 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 83 |
Show alignments to all cow chromosomes.