Cow genome map
| Conread name: | Emb1-C0005217_F24 |
| Conread position: | 3-299 |
| Cow position: | chr27:17422507-17422793 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 156, 26 |
| Conread position: | 14-289 |
| Cow position: | chr27:8960103-8959837 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-294 |
| Cow position: | chr27:1082236-1081965 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-298 |
| Cow position: | chr27:4331814-4331532 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr27:5925199-5925481 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 14-298 |
| Cow position: | chr27:8426784-8427065 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 140, 46 |
| Conread position: | 14-298 |
| Cow position: | chr27:9990283-9989995 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 100, 250 |
| Conread position: | 14-298 |
| Cow position: | chr27:11434102-11434383 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr27:20810347-20810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr27:26329859-26330140 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 14-298 |
| Cow position: | chr27:26784748-26785030 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 140, 86 |
| Conread position: | 14-298 |
| Cow position: | chr27:27665927-27666214 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 130, 100 |
| Conread position: | 14-299 |
| Cow position: | chr27:2000771-2001054 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr27:10578872-10579156 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr27:13308570-13308853 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr27:13353232-13353515 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr27:15374744-15375023 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 14-299 |
| Cow position: | chr27:15543941-15544224 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 141, 85 |
| Conread position: | 14-299 |
| Cow position: | chr27:16031471-16031188 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr27:22797730-22797448 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 7 |
| Conread position: | 14-299 |
| Cow position: | chr27:27849196-27849479 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-521 |
| Cow position: | chr27:27556734-27557264 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 84 |
| Conread position: | 14-523 |
| Cow position: | chr27:15405575-15406083 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 39 |
| Conread position: | 14-524 |
| Cow position: | chr27:21284303-21283787 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 65 |
| Conread position: | 15-298 |
| Cow position: | chr27:27291317-27291597 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 17-299 |
| Cow position: | chr27:31268155-31268425 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 137, 52 |
| Conread position: | 18-298 |
| Cow position: | chr27:24296337-24296061 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 18-299 |
| Cow position: | chr27:1520610-1520889 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 136, 81 |
| Conread position: | 18-299 |
| Cow position: | chr27:5984100-5983821 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 136, 80 |
| Conread position: | 19-299 |
| Cow position: | chr27:165989-165710 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 135, 96 |
| Conread position: | 22-298 |
| Cow position: | chr27:4982306-4982580 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 132, 92 |
| Conread position: | 29-299 |
| Cow position: | chr27:526157-525890 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 125, 69 |
| Conread position: | 34-298 |
| Cow position: | chr27:8972390-8972652 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 120, 65 |
| Conread position: | 40-523 |
| Cow position: | chr27:11489590-11490084 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 58 |
| Conread position: | 63-298 |
| Cow position: | chr27:19424403-19424169 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 63-299 |
| Cow position: | chr27:30307293-30307060 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 106-299 |
| Cow position: | chr27:4804794-4804997 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 106-299 |
| Cow position: | chr27:4828506-4828709 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 107-298 |
| Cow position: | chr27:12281707-12281900 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 107-298 |
| Cow position: | chr27:19932557-19932358 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 107-299 |
| Cow position: | chr27:28051770-28051575 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 41 |
| Conread position: | 109-295 |
| Cow position: | chr27:25784742-25784549 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 109-298 |
| Cow position: | chr27:12277122-12277318 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 110-296 |
| Cow position: | chr27:6017918-6018107 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 101 |
| Conread position: | 112-299 |
| Cow position: | chr27:4834122-4834311 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 42 |
| Conread position: | 123-297 |
| Cow position: | chr27:6524254-6524071 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 131-299 |
| Cow position: | chr27:19488037-19488213 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 191-513 |
| Cow position: | chr27:25792437-25792092 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 201-520 |
| Cow position: | chr27:11256561-11256227 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 19, 286 |
| Conread position: | 301-524 |
| Cow position: | chr27:21392242-21392473 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 304-524 |
| Cow position: | chr27:27930442-27930659 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 337-524 |
| Cow position: | chr27:4331468-4331276 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 338-524 |
| Cow position: | chr27:2681793-2681983 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 141 |
| Conread position: | 338-524 |
| Cow position: | chr27:8201208-8201398 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 338-524 |
| Cow position: | chr27:10579220-10579406 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 339-524 |
| Cow position: | chr27:4982646-4982835 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 352-524 |
| Cow position: | chr27:5914220-5914391 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 42 |
Show alignments to all cow chromosomes.