Cow genome map
| Conread name: | Emb1-C0005217_F24 |
| Conread position: | 3-298 |
| Cow position: | chr29:16013238-16012949 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 3-524 |
| Cow position: | chr29:7723610-7724145 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 151, 23 |
| Conread position: | 8-298 |
| Cow position: | chr29:26161900-26161608 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 148, 91 |
| Conread position: | 14-294 |
| Cow position: | chr29:15966611-15966340 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-296 |
| Cow position: | chr29:40618895-40618630 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 140, 73 |
| Conread position: | 14-297 |
| Cow position: | chr29:21474092-21474373 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-297 |
| Cow position: | chr29:30433250-30432968 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:45517-45239 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 206, 60 |
| Conread position: | 14-298 |
| Cow position: | chr29:2838393-2838111 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:7812254-7811972 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-298 |
| Cow position: | chr29:10644468-10644187 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:10820772-10820490 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 140, 86 |
| Conread position: | 14-298 |
| Cow position: | chr29:15117883-15117601 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:16102174-16101893 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:21226920-21227201 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-298 |
| Cow position: | chr29:28697435-28697154 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:32515269-32515553 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 14-298 |
| Cow position: | chr29:32543080-32543363 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-298 |
| Cow position: | chr29:34794920-34794638 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 83 |
| Conread position: | 14-298 |
| Cow position: | chr29:35264860-35265142 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-298 |
| Cow position: | chr29:43326454-43326739 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 14-298 |
| Cow position: | chr29:45462176-45462458 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 14-299 |
| Cow position: | chr29:726672-726955 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr29:1478395-1478677 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr29:2483851-2484134 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr29:3329536-3329818 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 34 |
| Conread position: | 14-299 |
| Cow position: | chr29:4163631-4163914 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr29:4864275-4864545 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 141, 28 |
| Conread position: | 14-299 |
| Cow position: | chr29:7847332-7847618 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 141, 84 |
| Conread position: | 14-299 |
| Cow position: | chr29:10237726-10237441 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 81 |
| Conread position: | 14-299 |
| Cow position: | chr29:12797529-12797808 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 14-299 |
| Cow position: | chr29:15699255-15699538 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr29:19525346-19525064 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 138, 79 |
| Conread position: | 14-299 |
| Cow position: | chr29:22745843-22746126 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 140, 100 |
| Conread position: | 14-299 |
| Cow position: | chr29:28657425-28657142 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr29:31094643-31094359 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr29:31184319-31184602 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr29:31764983-31765266 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr29:32556801-32556518 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 14-299 |
| Cow position: | chr29:32800212-32800502 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 14-299 |
| Cow position: | chr29:32962257-32962541 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 140, 83 |
| Conread position: | 14-299 |
| Cow position: | chr29:34524379-34524096 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr29:35956359-35956076 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 14-299 |
| Cow position: | chr29:42256035-42255752 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 85 |
| Conread position: | 15-298 |
| Cow position: | chr29:19620324-19620044 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 15-299 |
| Cow position: | chr29:16036473-16036191 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 15-524 |
| Cow position: | chr29:8624252-8623728 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 81 |
| Conread position: | 18-298 |
| Cow position: | chr29:408315-408039 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 136, 50 |
| Conread position: | 19-299 |
| Cow position: | chr29:32291541-32291820 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 135, 80 |
| Conread position: | 21-299 |
| Cow position: | chr29:24577604-24577879 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 28-299 |
| Cow position: | chr29:17153205-17153466 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 52 |
| Conread position: | 42-299 |
| Cow position: | chr29:40156715-40156970 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 112, 56 |
| Conread position: | 63-299 |
| Cow position: | chr29:38746039-38746274 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 65-298 |
| Cow position: | chr29:35274058-35273814 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 89-299 |
| Cow position: | chr29:27702083-27702303 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 92-299 |
| Cow position: | chr29:11786013-11786229 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 102-299 |
| Cow position: | chr29:40294328-40294533 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 108-299 |
| Cow position: | chr29:13624347-13624148 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 108-299 |
| Cow position: | chr29:27857599-27857800 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 108-299 |
| Cow position: | chr29:36208724-36208922 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 45, 142 |
| Conread position: | 116-513 |
| Cow position: | chr29:35281080-35280647 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 393 |
| Conread position: | 124-299 |
| Cow position: | chr29:12194391-12194574 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 131-298 |
| Cow position: | chr29:7428092-7427917 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 191-525 |
| Cow position: | chr29:10159604-10159260 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 301-523 |
| Cow position: | chr29:11786251-11786482 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 301-524 |
| Cow position: | chr29:1742752-1742979 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 301-524 |
| Cow position: | chr29:26262870-26263102 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 301-524 |
| Cow position: | chr29:42940226-42940458 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 136 |
| Conread position: | 304-524 |
| Cow position: | chr29:34780735-34780505 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 23, 181 |
| Conread position: | 337-524 |
| Cow position: | chr29:2693990-2694181 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 338-524 |
| Cow position: | chr29:5240686-5240875 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 338-524 |
| Cow position: | chr29:26161543-26161355 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 338-524 |
| Cow position: | chr29:27814082-27814267 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 155, 35 |
| Conread position: | 338-525 |
| Cow position: | chr29:2838046-2837855 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 141 |
| Conread position: | 339-524 |
| Cow position: | chr29:45462524-45462711 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 340-523 |
| Cow position: | chr29:45207800-45207980 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 36, 139 |
| Conread position: | 352-525 |
| Cow position: | chr29:21429556-21429383 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 354-523 |
| Cow position: | chr29:4481084-4480911 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 354-524 |
| Cow position: | chr29:8589436-8589262 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 381-524 |
| Cow position: | chr29:27857890-27858032 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 98 |
Show alignments to all cow chromosomes.