Cow genome map
| Conread name: | Emb1-C0005217_H15 |
| Conread position: | 8-199 |
| Cow position: | chr3:29595413-29595611 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 8-608 |
| Cow position: | chr3:52864250-52863626 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 9-240 |
| Cow position: | chr3:3054780-3055006 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 9-537 |
| Cow position: | chr3:64357948-64357411 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 25 |
| Conread position: | 9-590 |
| Cow position: | chr3:66990984-66991573 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 7 |
| Conread position: | 10-156 |
| Cow position: | chr3:6685671-6685818 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 10-157 |
| Cow position: | chr3:19802870-19803021 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 10-202 |
| Cow position: | chr3:48230784-48230590 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 148, 24 |
| Conread position: | 33-254 |
| Cow position: | chr3:63004501-63004271 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 44-527 |
| Cow position: | chr3:24591396-24590898 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 197 |
| Conread position: | 71-591 |
| Cow position: | chr3:15178671-15179188 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 72-297 |
| Cow position: | chr3:5391350-5391574 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 114-608 |
| Cow position: | chr3:2907762-2907266 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 141-350 |
| Cow position: | chr3:50127693-50127475 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 141-597 |
| Cow position: | chr3:58947643-58948122 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 329 |
| Conread position: | 160-592 |
| Cow position: | chr3:6685849-6686299 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 168-588 |
| Cow position: | chr3:4027829-4028227 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 185-330 |
| Cow position: | chr3:29597137-29597293 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 221-432 |
| Cow position: | chr3:38492764-38492971 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 240-575 |
| Cow position: | chr3:77423936-77424284 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 257-592 |
| Cow position: | chr3:36881768-36881425 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 260-607 |
| Cow position: | chr3:3981894-3982250 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 211 |
| Conread position: | 263-608 |
| Cow position: | chr3:45895397-45895038 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 263-608 |
| Cow position: | chr3:45974658-45975015 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 285-607 |
| Cow position: | chr3:5954005-5953679 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 6 |
| Conread position: | 285-607 |
| Cow position: | chr3:57484549-57484223 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 6 |
| Conread position: | 291-592 |
| Cow position: | chr3:46502719-46503027 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 306-447 |
| Cow position: | chr3:19944242-19944393 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 306-590 |
| Cow position: | chr3:63003347-63003057 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 307-588 |
| Cow position: | chr3:50011870-50012156 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 307-592 |
| Cow position: | chr3:3523214-3523506 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 307-592 |
| Cow position: | chr3:40339919-40339625 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 280 |
| Conread position: | 307-607 |
| Cow position: | chr3:37969241-37969547 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 307-608 |
| Cow position: | chr3:46679624-46679933 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 213 |
| Conread position: | 307-608 |
| Cow position: | chr3:50915525-50915834 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 197 |
| Conread position: | 308-608 |
| Cow position: | chr3:56340226-56339919 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 279 |
Show alignments to all cow chromosomes.