Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-231
Cow position: chr10:40150950-40150722 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 183
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 17, 42

Conread position: 1-435
Cow position: chr10:28946785-28947213 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 56

Conread position: 1-435
Cow position: chr10:47787989-47788424 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 3-435
Cow position: chr10:19840987-19841429 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 146

Conread position: 3-441
Cow position: chr10:29101406-29100972 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 304
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 111, 15

Conread position: 4-366
Cow position: chr10:57502123-57502480 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 17

Conread position: 4-444
Cow position: chr10:41568410-41568860 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 5-220
Cow position: chr10:42111730-42111952 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 143

Conread position: 5-263
Cow position: chr10:22583705-22583439 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 18, 51

Conread position: 5-274
Cow position: chr10:51782104-51781827 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 34

Conread position: 5-293
Cow position: chr10:50135882-50136172 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 5-295
Cow position: chr10:28642850-28643150 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 139

Conread position: 5-296
Cow position: chr10:20375521-20375234 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 5-381
Cow position: chr10:55285272-55285640 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 140

Conread position: 5-390
Cow position: chr10:20382708-20382330 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 15

Conread position: 5-396
Cow position: chr10:58812442-58812053 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 5-397
Cow position: chr10:39181106-39181508 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-397
Cow position: chr10:47908244-47908648 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-417
Cow position: chr10:56394709-56394303 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 281
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 110, 25

Conread position: 5-431
Cow position: chr10:32558658-32559093 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 5-435
Cow position: chr10:7897172-7896731 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr10:28256106-28255658 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 34

Conread position: 5-435
Cow position: chr10:33870595-33871035 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr10:39815088-39814649 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr10:57556025-57555585 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 146

Conread position: 5-445
Cow position: chr10:55094580-55095024 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr10:14805156-14805608 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 5-447
Cow position: chr10:19494979-19494525 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-447
Cow position: chr10:41387644-41387223 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 5-447
Cow position: chr10:44708301-44707855 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr10:54930893-54930453 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 5-449
Cow position: chr10:11822057-11822512 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 148

Conread position: 5-449
Cow position: chr10:29631488-29631031 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-449
Cow position: chr10:38849600-38850031 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 5-449
Cow position: chr10:68160326-68159875 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 133

Conread position: 5-451
Cow position: chr10:14853181-14853618 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 15

Conread position: 6-441
Cow position: chr10:39778804-39778375 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 11

Conread position: 7-447
Cow position: chr10:21488277-21488718 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 7-448
Cow position: chr10:38344047-38343605 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 31

Conread position: 7-449
Cow position: chr10:1378812-1379260 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 110

Conread position: 7-449
Cow position: chr10:7280790-7280341 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr10:10583429-10583885 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 146

Conread position: 7-449
Cow position: chr10:29845333-29844895 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 94

Conread position: 7-449
Cow position: chr10:30684180-30683727 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr10:32702040-32702520 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 324
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 140

Conread position: 7-449
Cow position: chr10:37771198-37771648 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 114

Conread position: 7-449
Cow position: chr10:57988682-57988232 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr10:62407465-62407018 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 46

Conread position: 8-448
Cow position: chr10:20369760-20369347 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 12

Conread position: 9-273
Cow position: chr10:36469137-36468878 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 158, 11

Conread position: 9-447
Cow position: chr10:19721767-19721340 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 11

Conread position: 10-402
Cow position: chr10:7319526-7319148 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 252
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 236, 99

Conread position: 10-449
Cow position: chr10:14334518-14334082 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 10

Conread position: 14-449
Cow position: chr10:8291376-8291807 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 21

Conread position: 15-449
Cow position: chr10:53485902-53485477 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 5

Conread position: 17-447
Cow position: chr10:41878248-41878686 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 17-453
Cow position: chr10:10172059-10172504 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 19

Conread position: 23-220
Cow position: chr10:6538726-6538926 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 13

Conread position: 23-322
Cow position: chr10:42641920-42642206 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 136, 13

Conread position: 23-441
Cow position: chr10:16927006-16927425 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 39

Conread position: 23-449
Cow position: chr10:22102568-22102997 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 123

Conread position: 25-417
Cow position: chr10:35225109-35224729 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 262
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 79, 7

Conread position: 28-383
Cow position: chr10:53321056-53320705 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 117

Conread position: 35-449
Cow position: chr10:40641296-40641707 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 36-411
Cow position: chr10:21884136-21884502 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 52

Conread position: 36-449
Cow position: chr10:19544037-19543641 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 278
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 78, 29

Conread position: 37-435
Cow position: chr10:60361245-60361627 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 104

Conread position: 37-449
Cow position: chr10:32317130-32317536 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 102

Conread position: 38-392
Cow position: chr10:51211282-51211636 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 226
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 43

Conread position: 41-402
Cow position: chr10:21517614-21517275 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 17

Conread position: 44-449
Cow position: chr10:39039940-39039552 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 34

Conread position: 53-324
Cow position: chr10:40398355-40398627 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 61, 91

Conread position: 56-258
Cow position: chr10:38535591-38535403 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 64-449
Cow position: chr10:22346333-22346723 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 79

Conread position: 67-179
Cow position: chr10:37491288-37491178 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 70-430
Cow position: chr10:20537752-20538095 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 18

Conread position: 70-449
Cow position: chr10:39439535-39439916 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 79-451
Cow position: chr10:22909071-22908700 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 33

Conread position: 120-415
Cow position: chr10:25250549-25250848 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 74, 64

Show alignments to all cow chromosomes.