Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-409 |
| Cow position: | chr12:19870140-19870539 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 1-435 |
| Cow position: | chr12:17979952-17980385 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 2-179 |
| Cow position: | chr12:349633-349818 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 3-385 |
| Cow position: | chr12:34174356-34174743 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 3-466 |
| Cow position: | chr12:24977585-24977135 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 5-231 |
| Cow position: | chr12:31202251-31202015 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-435 |
| Cow position: | chr12:3362178-3362611 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-444 |
| Cow position: | chr12:1888321-1887873 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 5-445 |
| Cow position: | chr12:1776729-1776279 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 5-445 |
| Cow position: | chr12:24433847-24433398 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-447 |
| Cow position: | chr12:32654789-32655239 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 5-447 |
| Cow position: | chr12:48471642-48471198 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 5-449 |
| Cow position: | chr12:14661112-14660659 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 6-358 |
| Cow position: | chr12:20843855-20844191 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 7-370 |
| Cow position: | chr12:21199230-21199592 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 7-444 |
| Cow position: | chr12:42858297-42857848 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 7-449 |
| Cow position: | chr12:20996843-20996396 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 7-449 |
| Cow position: | chr12:27854724-27854274 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 7-449 |
| Cow position: | chr12:27931664-27931218 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 8-449 |
| Cow position: | chr12:22204469-22204021 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 9-297 |
| Cow position: | chr12:25099831-25099530 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 9-430 |
| Cow position: | chr12:21942988-21943414 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 10-433 |
| Cow position: | chr12:23140938-23140499 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 10-435 |
| Cow position: | chr12:21429255-21429685 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 10-447 |
| Cow position: | chr12:11099477-11099923 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 10-448 |
| Cow position: | chr12:1403747-1404185 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 11-447 |
| Cow position: | chr12:35345798-35346219 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 13-449 |
| Cow position: | chr12:8676841-8676399 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 17-301 |
| Cow position: | chr12:600113-599833 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 17-426 |
| Cow position: | chr12:21209915-21210332 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 17-447 |
| Cow position: | chr12:37560262-37560702 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 19-258 |
| Cow position: | chr12:6861303-6861530 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 20-245 |
| Cow position: | chr12:12293354-12293571 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 8 |
| Conread position: | 23-466 |
| Cow position: | chr12:21482383-21482807 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 28-431 |
| Cow position: | chr12:7863610-7863201 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 36-441 |
| Cow position: | chr12:8554142-8554524 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 38-297 |
| Cow position: | chr12:22499965-22499711 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 38-431 |
| Cow position: | chr12:32677704-32677323 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 92 |
| Conread position: | 38-451 |
| Cow position: | chr12:19222285-19222665 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 39-445 |
| Cow position: | chr12:21253311-21252900 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 55-229 |
| Cow position: | chr12:20461775-20461948 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 124, 70 |
| Conread position: | 68-447 |
| Cow position: | chr12:24994658-24994274 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 76-413 |
| Cow position: | chr12:54037-53694 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 76-425 |
| Cow position: | chr12:17967128-17967481 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 81-435 |
| Cow position: | chr12:8138819-8138482 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 98, 59 |
| Conread position: | 143-433 |
| Cow position: | chr12:22568373-22568080 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 154 |
Show alignments to all cow chromosomes.